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BaseInfo

ncRNA ID	bra-miR171e
Species	Brassica rapa
Class	miRNA
Genome position	chrA3:21911195-21911313 [+]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	84 - UGAUUGAGCCGCGCCAAUAUC - 104
Stem-loop(if miRNA)	A    UC  CUUU         C       C      --  UCC   UUACACACG ACGA AGAG  CU    GAUAUUGGC UGGUUCA UCAGAU  CU   AGA         U |||| ||||  ||    ||||||||| ||||||| ||||||  ||   |||         A UGCU UCUC  GA    CUAUAACCG GCCGAGU AGUCUA  GA   UCU         C     C    GU  --CU         C       U      UU  CUC   UACAUAUAU
Stem-loop sequence	ACGAAAGAGUCCUCUUUGAUAUUGGCCUGGUUCACUCAGAUCUUCCAGAUUACACACGUACUAUAUACAUUCUCUCAGUUAUCUGAUUGAGCCGCGCCAAUAUCUCAGUGCUCUCUCGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009138366.2	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:1184   GAUAUUGGCGCGGCUCAAUCA   1204 Target Full Sequence	0.0	PREDICTED: Brassica rapa protein IQ-DOMAIN 31-like (LOC103860708), mRNA	protein IQ-DOMAIN 31-like(LOC103860708)	coding protein	psRNATarget
XM_009113266.2	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:900   GAUAUUGGCGCGGCUCAAUCA   920 Target Full Sequence	0.0	PREDICTED: Brassica rapa scarecrow-like protein 6 (LOC103836942), mRNA	scarecrow-like protein 6(LOC103836942)	coding protein	psRNATarget
XM_009135460.2	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:931   GAUAUUGGCGCGGCUCAAUCA   951 Target Full Sequence	0.0	PREDICTED: Brassica rapa scarecrow-like protein 27 (LOC103858159), mRNA	scarecrow-like protein 27(LOC103858159)	coding protein	psRNATarget
XM_009140575.2	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:883   GAUAUUGGCGCGGCUCAAUCA   903 Target Full Sequence	0.0	PREDICTED: Brassica rapa scarecrow-like protein 22 (LOC103862870), mRNA	scarecrow-like protein 22(LOC103862870)	coding protein	psRNATarget
XM_009105848.2	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:1081   GAUAUUGGCGCGGCUCAAUCA   1101 Target Full Sequence	0.0	PREDICTED: Brassica rapa scarecrow-like protein 27 (LOC103830132), mRNA	scarecrow-like protein 27(LOC103830132)	coding protein	psRNATarget
XM_009116447.2	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   |||||||*|*||||||||||| targets:642   GAUAUUGUCACGGCUCAAUCA   662 Target Full Sequence	2.5	PREDICTED: Brassica rapa scarecrow-like protein 15 (LOC103839968), mRNA	scarecrow-like protein 15(LOC103839968)	coding protein	psRNATarget

Reference

1	PMID:18558089 "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"; He XF, Fang YY, Feng L, Guo HS; FEBS Lett. 582:2445-2452(2008).
2	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).