ncRNA ID | novel_gma_miR694 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr10:13443806-13444015 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451634 |
Length | 22 |
Mature sequence(if miRNA) | 1 - AGUCCUAAUCUGCAAAAUCAGA - 22 |
Stem-loop(if miRNA) |
--      A               U       -  C   U           ---UGU     U   -U    ------CA     UUGUAGUAAGACUCUAUGUACCUCC   AGUCCU AUCUGCAAAAUCAGA AUUCAAA CC AGA UCACCAUUUCA      GUUUU UCU  CCAC        UUUUG                         U   |||||| ||||||||||||||| ||||||| || ||| |||||||||||      ||||| |||  ||||        |||||                         A   UCAGGA UAGACGUUUUAGUCU UAAGUUU GG UCU AGUGGUAAAGU      CAGAA GGA  GGUG        GGGAU                         G CA      A               C       U  A   U           UUCUAU     U   UC    UUGUGUUG     GAGGGAGAUAGCAACGGAAGAUCAA |
Stem-loop sequence | AGUCCUAAUCUGCAAAAUCAGAUAUUCAAACCCAGAUUCACCAUUUCAUGUGUUUUUUCUUCCACCAUUUUGUUGUAGUAAGACUCUAUGUACCUCCUAGAACUAGAAGGCAACGAUAGAGGGAGUAGGGGUUGUGUUGUGGCUAGGUAAGACUAUCUUUGAAAUGGUGAUUCUAGGUUUUGAAUCUCUGAUUUUGCAGAUAAGGACUAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006583522.2 |
|
2.5 | PREDICTED: Glycine max putative respiratory burst oxidase homolog protein H (LOC100791701), transcript variant X1, mRNA | putative respiratory burst oxidase homolog protein H(LOC100791701) | coding protein | psRNATarget |