Search result

BaseInfo

ncRNA ID novel_gma_miR694
Species Glycine max
Class miRNA
Genome position Chr10:13443806-13444015 [+]
Reference genome Glycine_max_v2.0
Source SRR1451634
Length 22
Mature sequence(if miRNA) 1 - AGUCCUAAUCUGCAAAAUCAGA - 22
Stem-loop(if miRNA) --      A               U       -  C   U           ---UGU     U   -U    ------CA     UUGUAGUAAGACUCUAUGUACCUCC
  AGUCCU AUCUGCAAAAUCAGA AUUCAAA CC AGA UCACCAUUUCA      GUUUU UCU  CCAC        UUUUG                         U
  |||||| ||||||||||||||| ||||||| || ||| |||||||||||      ||||| |||  ||||        |||||                         A
  UCAGGA UAGACGUUUUAGUCU UAAGUUU GG UCU AGUGGUAAAGU      CAGAA GGA  GGUG        GGGAU                         G
CA      A               C       U  A   U           UUCUAU     U   UC    UUGUGUUG     GAGGGAGAUAGCAACGGAAGAUCAA
Stem-loop sequence AGUCCUAAUCUGCAAAAUCAGAUAUUCAAACCCAGAUUCACCAUUUCAUGUGUUUUUUCUUCCACCAUUUUGUUGUAGUAAGACUCUAUGUACCUCCUAGAACUAGAAGGCAACGAUAGAGGGAGUAGGGGUUGUGUUGUGGCUAGGUAAGACUAUCUUUGAAAUGGUGAUUCUAGGUUUUGAAUCUCUGAUUUUGCAGAUAAGGACUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006583522.2
ncRNA:22   AGACUAAAACGUCUAAUCCUGA   1
  **||||*||||||||||*||||
targets:2393   GAUGAUAUUGCAGAUUAUGACU   2414

2.5 PREDICTED: Glycine max putative respiratory burst oxidase homolog protein H (LOC100791701), transcript variant X1, mRNA putative respiratory burst oxidase homolog protein H(LOC100791701) coding protein psRNATarget