| ncRNA ID | bra-miR162-3p |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | chrA3:21022093-21022218 [+] |
| Reference genome | Brapa_1.1 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 92 - UCGAUAAACCUCUGCAUCCAG - 112 |
| Stem-loop(if miRNA) |
U A UU U G C C A C GAAAA -AU G G AAG GAAG CGCUGGA GCAG GGUU AUCGAUC AUUC UGU AUG GUUG A | ||| |||| ||||||| |||| |||| ||||||| |||| ||| ||| |||| C UUC CUUC GUGACCU CGUC CCAA UAGCUAG UAAG ACG UAC UAAC A U C CU - A U A C U AAGGG AUU A |
| Stem-loop sequence | UGAAAGUUGAAGUCGCUGGAGGCAGCGGUUCAUCGAUCAAUUCCUGUGAAAAAUGAUGUUGGAAACAAUUUACAUGGGAAGCAUGAAUCGAUCGAUAAACCUCUGCAUCCAGUGCUUCUCCUUCCU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009121414.2 |
|
3.0 | PREDICTED: Brassica rapa endoribonuclease Dicer homolog 1 (LOC103844613), mRNA | endoribonuclease Dicer homolog 1(LOC103844613) | coding protein | psRNATarget | |||||||||
| XM_009150837.2 |
|
3.0 | PREDICTED: Brassica rapa auxin-responsive protein SAUR41 (LOC103872443), mRNA | auxin-responsive protein SAUR41(LOC103872443) | coding protein | psRNATarget |
| 1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |