Search result

BaseInfo

ncRNA ID	novel_gma_miR680
Species	Glycine max
Class	miRNA
Genome position	Chr7:40633791-40633894 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451633;SRR1451616
Length	21
Mature sequence(if miRNA)	84 - UUGAUUUUAGCUUAUGGGAGA - 104
Stem-loop(if miRNA)	--                              U        G       AAA   UCUCAUAAGCUAAAAUCAAUUUGUGCACUU AGCUUUUG AGAAGUU   U   |||||||||||||||||||||||||||||| |||||||| |||||||   G   AGGGUAUUCGAUUUUAGUUGAAUACGUGAA UUGAAAGU UUUUUAG   A AG                              -        A       GAG
Stem-loop sequence	UCUCAUAAGCUAAAAUCAAUUUGUGCACUUUAGCUUUUGGAGAAGUUAAAUGAGAGGAUUUUUAUGAAAGUUAAGUGCAUAAGUUGAUUUUAGCUUAUGGGAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006574366.2	ncRNA:21   AGAGGGUAUUCGAUUUUAGUU   1   |||=||||||||||||||||= targets:1322   UCUUCCAUAAGCUAAAAUCAG   1342 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100798622 (LOC100798622), transcript variant X1, mRNA	uncharacterized LOC100798622(LOC100798622)	coding protein	psRNATarget
XM_006583838.2	ncRNA:21   AGAGGGUAUUCGAUUUUAGUU   1   ||||||*||||=||||||||| targets:3710   UCUCCCUUAAGUUAAAAUCAA   3730 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g09900-like (LOC100775884), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At1g09900-like(LOC100775884)	coding protein	psRNATarget
XM_006583837.2	ncRNA:21   AGAGGGUAUUCGAUUUUAGUU   1   ||||||*||||=||||||||| targets:3853   UCUCCCUUAAGUUAAAAUCAA   3873 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g09900-like (LOC100775884), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At1g09900-like(LOC100775884)	coding protein	psRNATarget
XM_003554292.3	ncRNA:21   AGAGGGUAUUCGAUUUUAGUU   1   |=|||||*||||||||||=|| targets:1625   UUUCCCACAAGCUAAAAUUAA   1645 Target Full Sequence	2.5	PREDICTED: Glycine max protein GPR107-like (LOC100787919), mRNA	protein GPR107-like(LOC100787919)	coding protein	psRNATarget
AK286967.1	ncRNA:21   AGAGGGUAUUCGAUUUUAGUU   1   ||||||*|||*|||||||||| targets:486   UCUCCCUUAAACUAAAAUCAA   506 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-41-C10	NA	coding protein	psRNATarget