ncRNA ID | bra-miR162-5p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA3:21022093-21022218 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 18 - GGAGGCAGCGGUUCAUCGAUC - 38 |
Stem-loop(if miRNA) |
U A   UU    U       G    C    C       A    C   GAAAA   -AU    G  G AAG  GAAG CGCUGGA GCAG GGUU AUCGAUC AUUC UGU     AUG   GUUG A  | |||  |||| ||||||| |||| |||| ||||||| |||| |||     |||   ||||  C UUC  CUUC GUGACCU CGUC CCAA UAGCUAG UAAG ACG     UAC   UAAC A U C   CU    -       A    U    A       C    U   AAGGG   AUU    A |
Stem-loop sequence | UGAAAGUUGAAGUCGCUGGAGGCAGCGGUUCAUCGAUCAAUUCCUGUGAAAAAUGAUGUUGGAAACAAUUUACAUGGGAAGCAUGAAUCGAUCGAUAAACCUCUGCAUCCAGUGCUUCUCCUUCCU |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |