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BaseInfo

ncRNA ID bra-miR162-5p
Species Brassica rapa
Class miRNA
Genome position chrA3:21022093-21022218 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 18 - GGAGGCAGCGGUUCAUCGAUC - 38
Stem-loop(if miRNA) U A   UU    U       G    C    C       A    C   GAAAA   -AU    G
 G AAG  GAAG CGCUGGA GCAG GGUU AUCGAUC AUUC UGU     AUG   GUUG A
 | |||  |||| ||||||| |||| |||| ||||||| |||| |||     |||   ||||
 C UUC  CUUC GUGACCU CGUC CCAA UAGCUAG UAAG ACG     UAC   UAAC A
U C   CU    -       A    U    A       C    U   AAGGG   AUU    A
Stem-loop sequence UGAAAGUUGAAGUCGCUGGAGGCAGCGGUUCAUCGAUCAAUUCCUGUGAAAAAUGAUGUUGGAAACAAUUUACAUGGGAAGCAUGAAUCGAUCGAUAAACCUCUGCAUCCAGUGCUUCUCCUUCCU

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).