Search result

BaseInfo

ncRNA ID novel_gma_miR670
Species Glycine max
Class miRNA
Genome position Chr3:33037262-33037360 [+]
Reference genome Glycine_max_v2.0
Source SRR1451633
Length 21
Mature sequence(if miRNA) 79 - AUGAAUGGUGAGGAUGAGAAG - 99
Stem-loop(if miRNA) --C                    U            ----- A      AUU
   CUCAUCUUCAUCAUUCAUUU CUUGGAAUCUAA     C GAUAAG   A
   |||||||||||||||||||| ||||||||||||     | ||||||
   GAGUAGGAGUGGUAAGUAAA GAACUUUAGAUU     G UUAUUC   A
GAA                    U            ACCAA A      AGU
Stem-loop sequence CCUCAUCUUCAUCAUUCAUUUUCUUGGAAUCUAACAGAUAAGAUUAAUGACUUAUUAGAACCAUUAGAUUUCAAGUAAAUGAAUGGUGAGGAUGAGAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006590343.2
ncRNA:21   GAAGAGUAGGAGUGGUAAGUA   1
  |||||*|||||||||*|||||
targets:6572   CUUCUGAUCCUCACCUUUCAU   6592

2.5 PREDICTED: Glycine max protein NETWORKED 1A-like (LOC100800597), transcript variant X2, mRNA protein NETWORKED 1A-like(LOC100800597) coding protein psRNATarget
XM_014762910.1
ncRNA:21   GAAGAGUAGGAGUGGUAAGUA   1
  |*||||=||*|||||||||||
targets:7   CGUCUCGUCGUCACCAUUCAU   27

2.5 PREDICTED: Glycine max BTB/POZ and MATH domain-containing protein 2-like (LOC100811065), transcript variant X1, mRNA BTB/POZ and MATH domain-containing protein 2-like(LOC100811065) coding protein psRNATarget
BT094715.1
ncRNA:21   GAAGAGUAGGAGUGGUAAGUA   1
  *||*||||||*||||||||||
targets:103   AUUAUCAUCCGCACCAUUCAU   123

2.5 Soybean clone JCVI-FLGm-6E3 unknown mRNA NA coding protein psRNATarget