Search result

BaseInfo

ncRNA ID	novel_gma_miR669
Species	Glycine max
Class	miRNA
Genome position	Chr2:7542834-7542933 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451633;SRR1451640;SRR1451641
Length	20
Mature sequence(if miRNA)	1 - UUCAUGUAUGAUUGUAUGUC - 20
Stem-loop(if miRNA)	-C       C                        --U   ----U      A   UAUACAA UAUACAUGGAUGGUCAAAAUUAAG   UAG     GGUCUU C   ||||||| ||||||||||||||||||||||||   |||     |||||| A   GUAUGUU GUAUGUACUUAUCAGUUUUAAUUU   AUU     CCGGAA A CU       A                        UCU   UAUGU      A
Stem-loop sequence	CUAUACAACUAUACAUGGAUGGUCAAAAUUAAGUUAGUGGUCUUACAAAAAGGCCUGUAUUUAUCUUUUAAUUUUGACUAUUCAUGUAUGAUUGUAUGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001255380.2	ncRNA:20   CUGUAUGUUAGUAUGUACUU   1   *||*|*|||||||||||||| targets:416   UACCUUCAAUCAUACAUGAA   435 Target Full Sequence	2.0	Glycine max prohibitin-2-like (LOC100806763), mRNA	prohibitin-2-like(LOC100806763)	coding protein	psRNATarget
BT096957.1	ncRNA:20   CUGUAUGUUAGUAUGUACUU   1   *||*|*|||||||||||||| targets:418   UACCUUCAAUCAUACAUGAA   437 Target Full Sequence	2.0	Soybean clone JCVI-FLGm-21K20 unknown mRNA	NA	coding protein	psRNATarget
XM_006592793.2	ncRNA:20   CUGUAUGUUAGUAUGUACUU   1   *||*|*|||||||||||||| targets:551   UACCUUCAAUCAUACAUGAA   570 Target Full Sequence	2.0	PREDICTED: Glycine max prohibitin-1, mitochondrial-like (LOC100793227), mRNA	prohibitin-1, mitochondrial-like(LOC100793227)	coding protein	psRNATarget
XM_014765246.1	ncRNA:20   CUGUAUGUUAGUAUGUACUU   1   ||||*|||||||||||||*| targets:1273   GACAGACAAUCAUACAUGCA   1292 Target Full Sequence	2.5	PREDICTED: Glycine max putative wall-associated receptor kinase-like 16 (LOC106795446), mRNA	putative wall-associated receptor kinase-like 16(LOC106795446)	coding protein	psRNATarget
XM_003550448.3	ncRNA:20   CUGUAUGUUAGUAUGUACUU   1   *||||||||||||||||*|* targets:80   UACAUACAAUCAUACAUCAU   99 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100816043 (LOC100816043), mRNA	uncharacterized LOC100816043(LOC100816043)	coding protein	psRNATarget
XM_003524273.3	ncRNA:20   CUG-UAUGUUAGUAUGUACUU   1   *||-||=|||||||||||||| targets:2417   AACUAUGCAAUCAUACAUGAA   2437 Target Full Sequence	3.0	PREDICTED: Glycine max MACPF domain-containing protein At4g24290-like (LOC100787052), mRNA	MACPF domain-containing protein At4g24290-like(LOC100787052)	coding protein	psRNATarget
XM_003534099.3	ncRNA:20   CUG-UAUGUUAGUAUGUACUU   1   |||-|*||||||||||||||| targets:1542   GACCACACAAUCAUACAUGAA   1562 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized GPI-anchored protein At4g28100-like (LOC100813726), mRNA	uncharacterized GPI-anchored protein At4g28100-like(LOC100813726)	coding protein	psRNATarget