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BaseInfo

ncRNA ID bra-miR167a
Species Brassica rapa
Class miRNA
Genome position chrA3:19161779-19161912 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 18 - UGAAGCUGCCAGCAUGAUCUA - 38
Stem-loop(if miRNA)      AC   -  U U A         C             UA  -     UU ---         UA
GGUGC  CGG CA C G UGAAGCUGC AGCAUGAUCUAGU  AC UUUAU  C   UCCGUUGUU  U
|||||  ||| || | | ||||||||| |||||||||||||  || |||||  |   |||||||||  C
CUACG  GUC GU G C ACUUUGAUG UUGUACUAGAUUA  UG GAAUA  G   AGGUAACAG  C
     CU   A  U C C         C             GC  U     GG AAA         UA
Stem-loop sequence GGUGCACCGGCAUCUGAUGAAGCUGCCAGCAUGAUCUAGUUAACUUUAUUUCUCCGUUGUUUAUCCAUGACAAUGGAAAAGGGAUAAGUGUCGAUUAGAUCAUGUUCGUAGUUUCACCCGUUGACUGUCGCAUC

Reference

1 PMID:18558089
"Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica";
He XF, Fang YY, Feng L, Guo HS;
FEBS Lett. 582:2445-2452(2008).