Search result

BaseInfo

ncRNA ID bra-miR9567-3p
Species Brassica rapa
Class miRNA
Genome position chrA3:17824435-17824572 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 106 - AAACUAUAUGUGUUGCUUAGA - 126
Stem-loop(if miRNA) AUU              A                         UA                 --A  AA
   AGUUACGCAUCUAA CAACACAUAUAGUUUGCAGGGUGGA  AAACUGGCAUUAUAUGU   AC  G
   |||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||   ||
   UCAAUGCGUAGAUU GUUGUGUAUAUCAAACGUCCCACCU  UUUGAUCGUAAUAUACA   UG  A
GGU              C                         UG                 AGA  GC
Stem-loop sequence AUUAGUUACGCAUCUAAACAACACAUAUAGUUUGCAGGGUGGAUAAAACUGGCAUUAUAUGUAACAAGACGGUAGAACAUAUAAUGCUAGUUUGUUCCACCCUGCAAACUAUAUGUGUUGCUUAGAUGCGUAACUUGG

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).