ncRNA ID | ath-miR862-3p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr2:10718096-10718198 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 75 - AUAUGCUGGAUCUACUUGAAG - 95 |
Stem-loop(if miRNA) |
            CAA      G                      -ACA  G ACAGUAGUUUUC   UAGGUC AGCAUGUGCUGAAACUGUGUGU    GA U ||||||||||||   |||||| ||||||||||||||||||||||    || UGUCAUCAGAAG   AUCUAG UCGUAUACGACUUUGACACACA    CU U             UUC      G                      AAUA  C |
Stem-loop sequence | ACAGUAGUUUUCCAAUAGGUCGAGCAUGUGCUGAAACUGUGUGUACAGAGUUCUCAUAAACACACAGUUUCAGCAUAUGCUGGAUCUACUUGAAGACUACUGU |
1 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |
2 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |