Search result

BaseInfo

ncRNA ID novel_gma_miR637
Species Glycine max
Class miRNA
Genome position Chr14:20189048-20189201 [+]
Reference genome Glycine_max_v2.0
Source SRR1451633;SRR1451637;SRR1451639;SRR1451642;SRR1451654;SRR1295525;SRR1295527;SRR1292928;SRR1451606;SRR1292929;SRR1451615;SRR1451617;SRR1451620;SRR1451621;SRR1451626
Length 24
Mature sequence(if miRNA) 131 - AUGUAGACAUUCUAAGACGGUUCU - 154
Stem-loop(if miRNA) --               C     A         UUUUUUU            C       A   ------   U      ACA
  AACCGUCUUAGAAUG CUACA UCUAAGAUG       UUUUUCAAAGAA CGUCUUA AAU      AUU UUUUAA   A
  ||||||||||||||| ||||| |||||||||       |||||||||||| ||||||| |||      ||| ||||||
  UUGGCAGAAUCUUAC GAUGU AGAUUUUGC       AAAAAGUUUUUU GCAGAAU UUA      UAA AAAAUU   A
UC               A     A         ------U            A       C   GAAGUU   U      AAA
Stem-loop sequence AACCGUCUUAGAAUGCCUACAAUCUAAGAUGUUUUUUUUUUUUCAAAGAACCGUCUUAAAAUAUUUUUUUAAACAAAAAAUUAAAAUAAUUUGAAGAUUCUAAGACGAUUUUUUGAAAAAUCGUUUUAGAAUGUAGACAUUCUAAGACGGUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014763138.1
ncRNA:24   UCUUGGCAGAAUCUUACAGAUGUA   1
  |||||||||||||||||||||=||
targets:1433   AGAACCGUCUUAGAAUGUCUAUAU   1456

1.5 PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X3, mRNA uncharacterized LOC100806242(LOC100806242) coding protein psRNATarget
XM_006589010.2
ncRNA:24   UCUUGGCAGAAUCUUACAGAUGUA   1
  |||||||||||||||||||||=||
targets:2142   AGAACCGUCUUAGAAUGUCUAUAU   2165

1.5 PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X2, mRNA uncharacterized LOC100806242(LOC100806242) coding protein psRNATarget