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BaseInfo

ncRNA ID	bra-miR9558-3p
Species	Brassica rapa
Class	miRNA
Genome position	chrA3:16624842-16624987 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	22
Mature sequence(if miRNA)	19 - UUGCAAGCCAGACAUUUCCUUU - 40
Stem-loop(if miRNA)	CAA  CA          C    -                      --GAA  GU   UUGGGUGGUGUAGGUUC    UG  AACACUGUGG AAAG AGAUGUCUGGCUUGCAACAUCU     AU  CAC                 A    ||  |||||||||| |||| ||||||||||||||||||||||     ||  |||                 G    AC  UUGUGACACC UUUC UUUACAGACCGAACGUUGUAGA     UC  AUC                 A CUG  AC          C    C                      GAUUG  --   UACACUGUUACAAGUGU
Stem-loop sequence	CAAUGCAAACACUGUGGCAAAGAGAUGUCUGGCUUGCAACAUCUGAAAUGUCACUUGGGUGGUGUAGGUUCAGAUGUGAACAUUGUCACAUCUACUGUUAGAGAUGUUGCAAGCCAGACAUUUCCUUUCCCACAGUGUUCACAGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009137026.2	ncRNA:22   UUUCCUUUACAGACCGAACGUU   1   |=|*|||||||||||||||||| targets:164   AGAAGAAAUGUCUGGCUUGCAA   185 Target Full Sequence	1.0	PREDICTED: Brassica rapa uncharacterized LOC103859489 (LOC103859489), transcript variant X1, mRNA	uncharacterized LOC103859489(LOC103859489)	coding protein	psRNATarget
XM_018657923.1	ncRNA:22   UUUCCUUUACAGACCGAACGUU   1   |=|*|||||||||||||||||| targets:173   AGAAGAAAUGUCUGGCUUGCAA   194 Target Full Sequence	1.0	PREDICTED: Brassica rapa uncharacterized LOC103859489 (LOC103859489), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_009148033.2	ncRNA:22   UUUCCUUUACAGACCGAACGUU   1   *==*|||||*|||||||||||| targets:345   UGGUGAAAUCUCUGGCUUGCAA   366 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103869951 (LOC103869951), mRNA	uncharacterized LOC103869951(LOC103869951)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).