Search result

BaseInfo

ncRNA ID novel_gma_miR633
Species Glycine max
Class miRNA
Genome position Chr1:34770833-34770961 [+]
Reference genome Glycine_max_v2.0
Source SRR1451633;SRR1451652
Length 21
Mature sequence(if miRNA) 109 - UAAGAACCGUCUUAGAAAGGA - 129
Stem-loop(if miRNA) --               G            C          GU      --       C    CCCU
  UUUUCUAAGACGGUU UUAGCUAAGACC GUCUUAGAAA  GGACAU  UCUAAGA GGUU    U
  ||||||||||||||| |||||||||||| ||||||||||  ||||||  ||||||| ||||
  GAAAGAUUCUGCCAA AAUCGAUUCUGG CAGAAUCUUU  UCUGUG  AGAUUCU CCAA    C
AG               G            -          --      AA       A    CAAU
Stem-loop sequence UUUUCUAAGACGGUUGUUAGCUAAGACCCGUCUUAGAAAGUGGACAUUCUAAGACGGUUCCCUUCUAACAACCAUCUUAGAAAGUGUCUUUUCUAAGACGGUCUUAGCUAAGAACCGUCUUAGAAAGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014771087.1
ncRNA:21   AGGAAAGAUUCUGCCAAGAAU   1
  **|*||||||||||||||||*
targets:2512   CACAUUCUAAGACGGUUCUUU   2532

2.0 PREDICTED: Glycine max uncharacterized LOC102664939 (LOC102664939), transcript variant X2, mRNA uncharacterized LOC102664939(LOC102664939) coding protein psRNATarget
XM_006577404.1
ncRNA:21   AGGAAAGAUUCUGCCAAGAAU   1
  *=*||||||||||||||||*|
targets:65   CUGUUUCUAAGACGGUUCUGA   85

2.5 PREDICTED: Glycine max uncharacterized LOC102670046 (LOC102670046), mRNA uncharacterized LOC102670046(LOC102670046) coding protein psRNATarget