| ncRNA ID | bra-miR9558-5p |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | chrA3:16624842-16624987 [-] |
| Reference genome | Brapa_1.1 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 106 - AGAGAUGUCUGGCUUGCAACA - 126 |
| Stem-loop(if miRNA) |
CAA CA C - --GAA GU UUGGGUGGUGUAGGUUC UG AACACUGUGG AAAG AGAUGUCUGGCUUGCAACAUCU AU CAC A || |||||||||| |||| |||||||||||||||||||||| || ||| G AC UUGUGACACC UUUC UUUACAGACCGAACGUUGUAGA UC AUC A CUG AC C C GAUUG -- UACACUGUUACAAGUGU |
| Stem-loop sequence | CAAUGCAAACACUGUGGCAAAGAGAUGUCUGGCUUGCAACAUCUGAAAUGUCACUUGGGUGGUGUAGGUUCAGAUGUGAACAUUGUCACAUCUACUGUUAGAGAUGUUGCAAGCCAGACAUUUCCUUUCCCACAGUGUUCACAGUC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_018654428.1 |
|
2.0 | PREDICTED: Brassica rapa uncharacterized LOC103839266 (LOC103839266), transcript variant X5, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_009115887.2 |
|
2.0 | PREDICTED: Brassica rapa uncharacterized LOC103839266 (LOC103839266), transcript variant X3, mRNA | uncharacterized LOC103839266(LOC103839266) | coding protein | psRNATarget | |||||||||
| XM_018654427.1 |
|
2.0 | PREDICTED: Brassica rapa uncharacterized LOC103839266 (LOC103839266), transcript variant X4, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_009115805.2 |
|
2.0 | PREDICTED: Brassica rapa uncharacterized LOC103839266 (LOC103839266), transcript variant X1, mRNA | uncharacterized LOC103839266(LOC103839266) | coding protein | psRNATarget |
| 1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |