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BaseInfo

ncRNA ID novel_gma_miR623
Species Glycine max
Class miRNA
Genome position Chr4:5047200-5047284 [-]
Reference genome Glycine_max_v2.0
Source SRR1294478;SRR1451657;SRR1451662;SRR1451664;SRR1295520
Length 23
Mature sequence(if miRNA) 1 - GCUCACUUCUCUUUCUGUCAACU - 23
Stem-loop(if miRNA) --         -    -        A        CU       G
  UUGACAGAA GAGA GUGAGCAC CAGAAGCA  UGGUAUA U
  ||||||||| |||| |||||||| ||||||||  |||||||
  AACUGUCUU CUCU CACUCGUG GUUUUCGU  GUCAUAU U
UC         U    U        C        -U       A
Stem-loop sequence UUGACAGAAGAGAGUGAGCACACAGAAGCACUUGGUAUAGUUAUAUACUGUUGCUUUUGCGUGCUCACUUCUCUUUCUGUCAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB170928.1
ncRNA:23   UCAACUGUCUUUCUCUUCACUCG   1
  |***|||||||||||*|||||||
targets:6   AACCGACAGAAAGAGUAGUGAGC   28

1.5 Sequence 8592 from Patent EP2559767 NA coding protein psRNATarget
LQ242597.1
ncRNA:23   UCAACUGUCUUUCUCUUCACUCG   1
  |***|||||||||||*|||||||
targets:6   AACCGACAGAAAGAGUAGUGAGC   28

1.5 Sequence 8592 from Patent EP2985353 NA coding protein psRNATarget
HI410467.1
ncRNA:23   UCAACUGUCUUUCUCUUCACUCG   1
  |***|||||||||||*|||||||
targets:6   AACCGACAGAAAGAGUAGUGAGC   28

1.5 Sequence 8592 from Patent EP2074227 NA coding protein psRNATarget
XM_014768596.1
ncRNA:23   UCAACUGUCUUUCUCUUCACUCG   1
  |***|||||=|||||*|||||||
targets:851   AAAAGACAGGAAGAGCAGUGAGC   873

2.5 PREDICTED: Glycine max metallophosphoesterase 1-like (LOC102667430), mRNA metallophosphoesterase 1-like(LOC102667430) coding protein psRNATarget