Search result

BaseInfo

ncRNA ID	novel_gma_miR616
Species	Glycine max
Class	miRNA
Genome position	Chr7:12016629-12016758 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451632
Length	24
Mature sequence(if miRNA)	107 - UUUCAGAGAACCGUCUUAGAAUGU - 130
Stem-loop(if miRNA)	--          AA                   A     UCAAAUGGUUUUUCAGAGAAUCUUCU   AUUCUAAGAC  UUCUCUGAAAAAUCGUCUU GAAAG                          U   ||||||||||  ||||||||||||||||||| |||||                          A   UAAGAUUCUG  AAGAGACUUUUUAGUAGAA UCUUA                          G UG          CC                   -     GGAGUUAAAAAAAAUAUUUUUUUUAA
Stem-loop sequence	AUUCUAAGACAAUUCUCUGAAAAAUCGUCUUAGAAAGUCAAAUGGUUUUUCAGAGAAUCUUCUUAGAAUUUUUUUUAUAAAAAAAAUUGAGGAUUCUAAGAUGAUUUUUCAGAGAACCGUCUUAGAAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014771087.1	ncRNA:24   UGUAAGAUUCUGCCAAGAGACUUU   1   |||||||||||||||||||||||| targets:2609   ACAUUCUAAGACGGUUCUCUGAAA   2632 Target Full Sequence	0.0	PREDICTED: Glycine max uncharacterized LOC102664939 (LOC102664939), transcript variant X2, mRNA	uncharacterized LOC102664939(LOC102664939)	coding protein	psRNATarget
XM_014771087.1	ncRNA:24   UGUAAGAUUCUGCCAAGAGACUUU   1   ||||||||||||||||||=||||| targets:2513   ACAUUCUAAGACGGUUCUUUGAAA   2536 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102664939 (LOC102664939), transcript variant X2, mRNA	uncharacterized LOC102664939(LOC102664939)	coding protein	psRNATarget
XM_014763138.1	ncRNA:24   UGUAAGAUUCUGCCAAGAGACUUU   1   |||||||||||=|||||||||||| targets:1527   ACAUUCUAAGAUGGUUCUCUGAAA   1550 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X3, mRNA	uncharacterized LOC100806242(LOC100806242)	coding protein	psRNATarget
XM_006589010.2	ncRNA:24   UGUAAGAUUCUGCCAAGAGACUUU   1   |||||||||||=|||||||||||| targets:2236   ACAUUCUAAGAUGGUUCUCUGAAA   2259 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X2, mRNA	uncharacterized LOC100806242(LOC100806242)	coding protein	psRNATarget