ncRNA ID | bra-miR2111a-3p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA3:15829023-15829183 [-] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 31 - GUCCUCGGGAUGCGGAUUACC - 51 |
Stem-loop(if miRNA) |
  GA    -AA    ---         CC                    -UUU      -UGAUUAU       ---AC    C CA  UGAC   GUAU   UGGUGAGGA  GGGUAAUCUGCAUCCUGAGG    AAAGCU        ACGCAUA     AUGC G ||  ||||   ||||   |||||||||  ||||||||||||||||||||    ||||||        |||||||     |||| GU  AUUG   CAUG   AUCAUUCCU  UCCAUUAGGCGUAGGGCUCC    UUUCGA        UGUGUAU     UACG A   AC    GCA    CAU         UC                    UGAU      UAAGAUUU       CAAUA    C |
Stem-loop sequence | CAGAUGACAAGUAUUGGUGAGGACCGGGUAAUCUGCAUCCUGAGGUUUAAAGCUUGAUUAUACGCAUAACAUGCCGACGCAUAUAACUAUGUGUUUUAGAAUAGCUUUUAGUCCUCGGGAUGCGGAUUACCUCUUCCUUACUAUACGUACACGGUUACAUG |
1 | PMID:19854858
"Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing"; Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ; Plant Physiol. 151:2120-2132(2009). |