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BaseInfo

ncRNA ID bra-miR2111a-3p
Species Brassica rapa
Class miRNA
Genome position chrA3:15829023-15829183 [-]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 31 - GUCCUCGGGAUGCGGAUUACC - 51
Stem-loop(if miRNA)   GA    -AA    ---         CC                    -UUU      -UGAUUAU       ---AC    C
CA  UGAC   GUAU   UGGUGAGGA  GGGUAAUCUGCAUCCUGAGG    AAAGCU        ACGCAUA     AUGC G
||  ||||   ||||   |||||||||  ||||||||||||||||||||    ||||||        |||||||     ||||
GU  AUUG   CAUG   AUCAUUCCU  UCCAUUAGGCGUAGGGCUCC    UUUCGA        UGUGUAU     UACG A
  AC    GCA    CAU         UC                    UGAU      UAAGAUUU       CAAUA    C
Stem-loop sequence CAGAUGACAAGUAUUGGUGAGGACCGGGUAAUCUGCAUCCUGAGGUUUAAAGCUUGAUUAUACGCAUAACAUGCCGACGCAUAUAACUAUGUGUUUUAGAAUAGCUUUUAGUCCUCGGGAUGCGGAUUACCUCUUCCUUACUAUACGUACACGGUUACAUG

Reference

1 PMID:19854858
"Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing";
Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ;
Plant Physiol. 151:2120-2132(2009).