| ncRNA ID | bra-miR2111a-5p |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | chrA3:15829023-15829183 [-] |
| Reference genome | Brapa_1.1 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 113 - UAAUCUGCAUCCUGAGGUUUA - 133 |
| Stem-loop(if miRNA) |
GA -AA --- CC -UUU -UGAUUAU ---AC C CA UGAC GUAU UGGUGAGGA GGGUAAUCUGCAUCCUGAGG AAAGCU ACGCAUA AUGC G || |||| |||| ||||||||| |||||||||||||||||||| |||||| ||||||| |||| GU AUUG CAUG AUCAUUCCU UCCAUUAGGCGUAGGGCUCC UUUCGA UGUGUAU UACG A AC GCA CAU UC UGAU UAAGAUUU CAAUA C |
| Stem-loop sequence | CAGAUGACAAGUAUUGGUGAGGACCGGGUAAUCUGCAUCCUGAGGUUUAAAGCUUGAUUAUACGCAUAACAUGCCGACGCAUAUAACUAUGUGUUUUAGAAUAGCUUUUAGUCCUCGGGAUGCGGAUUACCUCUUCCUUACUAUACGUACACGGUUACAUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009153742.2 |
|
1.0 | PREDICTED: Brassica rapa F-box/kelch-repeat protein At3g27150 (LOC103875246), mRNA | F-box/kelch-repeat protein At3g27150(LOC103875246) | coding protein | psRNATarget | |||||||||
| XM_009131199.2 |
|
1.0 | PREDICTED: Brassica rapa F-box/kelch-repeat protein At3g27150-like (LOC103854265), transcript variant X2, mRNA | F-box/kelch-repeat protein At3g27150-like(LOC103854265) | coding protein | psRNATarget | |||||||||
| XM_009131198.2 |
|
1.0 | PREDICTED: Brassica rapa F-box/kelch-repeat protein At3g27150-like (LOC103854265), transcript variant X1, mRNA | F-box/kelch-repeat protein At3g27150-like(LOC103854265) | coding protein | psRNATarget |
| 1 | PMID:19854858
"Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing"; Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ; Plant Physiol. 151:2120-2132(2009). |