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BaseInfo

ncRNA ID novel_gma_miR599
Species Glycine max
Class miRNA
Genome position Chr4:36050522-36050576 [+]
Reference genome Glycine_max_v2.0
Source SRR1451632
Length 21
Mature sequence(if miRNA) 35 - GAUGAAGUUGAUCCGUAUGUU - 55
Stem-loop(if miRNA) --               G       AG
  CAUAUGGAUCAACUU AUCUGUA  G
  ||||||||||||||| |||||||  U
  GUAUGCCUAGUUGAA UAGGCAU  U
UU               G       AU
Stem-loop sequence CAUAUGGAUCAACUUGAUCUGUAAGGUUUAUACGGAUGAAGUUGAUCCGUAUGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003547498.3
ncRNA:21   UUGUAUGCCUAGUUGAAGUAG   1
  |=|||||||||||||||*|||
targets:410   AGCAUACGGAUCAACUUGAUC   430

1.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:21   UUGUAUGCCUAGUUGAAGUAG   1
  |=|||||||||||||||*|||
targets:1005   AGCAUACGGAUCAACUUGAUC   1025

1.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_006593444.2
ncRNA:21   UUGUAUGCCUAGUUGAAGUAG   1
  **=||||||||*|||||||||
targets:3701   UUUAUACGGAUGAACUUCAUC   3721

2.5 PREDICTED: Glycine max calcium-transporting ATPase 8, plasma membrane-type-like (LOC100813841), transcript variant X11, mRNA calcium-transporting ATPase 8, plasma membrane-type-like(LOC100813841) coding protein psRNATarget