Search result

BaseInfo

ncRNA ID novel_gma_miR596
Species Glycine max
Class miRNA
Genome position Chr3:26191365-26191447 [-]
Reference genome Glycine_max_v2.0
Source SRR1451632;SRR1451622
Length 24
Mature sequence(if miRNA) 60 - UUCAGAGAACCGUCUUAGAAUGUC - 83
Stem-loop(if miRNA) --UUCA         C       -G  UUUUCUUAA   AAA
      GAGAACCGU UUAGAAU  UC         AAC   A
      ||||||||| |||||||  ||         |||
      CUUUUGGUA AAUCUUA  AG         UUG   A
AAAACA         U       AA  UUUAAAAAA   AAA
Stem-loop sequence UUCAGAGAACCGUCUUAGAAUGUCUUUUCUUAAAACAAAAAAAAGUUAAAAAAUUUGAAAAUUCUAAUAUGGUUUUCACAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014771087.1
ncRNA:24   CUGUAAGAUUCUGCCAAGAGACUU   1
  *|||||||||||||||||||||||
targets:2608   UACAUUCUAAGACGGUUCUCUGAA   2631

0.0 PREDICTED: Glycine max uncharacterized LOC102664939 (LOC102664939), transcript variant X2, mRNA uncharacterized LOC102664939(LOC102664939) coding protein psRNATarget
XM_014771087.1
ncRNA:24   CUGUAAGAUUCUGCCAAGAGACUU   1
  *||||||||||||||||||=||||
targets:2512   CACAUUCUAAGACGGUUCUUUGAA   2535

1.5 PREDICTED: Glycine max uncharacterized LOC102664939 (LOC102664939), transcript variant X2, mRNA uncharacterized LOC102664939(LOC102664939) coding protein psRNATarget
XM_014763138.1
ncRNA:24   CUGUAAGAUUCUGCCAAGAGACUU   1
  *|||||||||||=|||||||||||
targets:1526   UACAUUCUAAGAUGGUUCUCUGAA   1549

1.5 PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X3, mRNA uncharacterized LOC100806242(LOC100806242) coding protein psRNATarget
XM_006589010.2
ncRNA:24   CUGUAAGAUUCUGCCAAGAGACUU   1
  *|||||||||||=|||||||||||
targets:2235   UACAUUCUAAGAUGGUUCUCUGAA   2258

1.5 PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X2, mRNA uncharacterized LOC100806242(LOC100806242) coding protein psRNATarget