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BaseInfo

ncRNA ID	bra-miR9568-3p
Species	Brassica rapa
Class	miRNA
Genome position	chrA3:14094126-14094275 [+]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	112 - UCAUCGUAAGAGAUCUGCAUU - 132
Stem-loop(if miRNA)	UUC   U    C               A     G         C        A       -AACA    UUA  U    UCU AGAG AUGAUUAAUGCGGAU UCUUA GAUGAGGUU UUAGUGUA UAUAAAA     UUUA   CU A    ||| |||| ||||||||||||||| ||||| ||||||||| |||||||| |||||||     ||||   ||    AGA UCUU UACUAAUUACGUCUA AGAAU CUACUCCAA AAUUGCAU AUAUUUU     AAAU   GA A CCU   U    A               G     G         A        G       CUAAG    -UC  A
Stem-loop sequence	UUCUCUUAGAGCAUGAUUAAUGCGGAUAUCUUAGGAUGAGGUUCUUAGUGUAAUAUAAAAAACAUUUAUUACUUAAAAGCUUAAAGAAUCUUUUAUAGUACGUUAAAAACCUCAUCGUAAGAGAUCUGCAUUAAUCAUAUUCUUAGAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009136269.2	ncRNA:21   UUACGUCUAGAGAAUGCUACU   1   ||||||||||||||||||||| targets:1761   AAUGCAGAUCUCUUACGAUGA   1781 Target Full Sequence	0.0	PREDICTED: Brassica rapa BTB/POZ domain-containing protein POB1 (LOC103858841), mRNA	BTB/POZ domain-containing protein POB1(LOC103858841)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).