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BaseInfo

ncRNA ID novel_gma_miR578
Species Glycine max
Class miRNA
Genome position Chr18:49087610-49087746 [-]
Reference genome Glycine_max_v2.0
Source SRR1451632
Length 24
Mature sequence(if miRNA) 114 - AACCCAUAUGGAUUGGCAGUCCGU - 137
Stem-loop(if miRNA) --               GC    C   G     ---UUUU        -        UUUUUGCUAUA   A
  AACCCAUAUGGAUUG  AGUC GUA GGGUU       UUUUAAAA AAAAAGAU           UGG C
  |||||||||||||||  |||| ||| |||||       |||||||| ||||||||           |||
  UUGGGUAUGCCUGAC  UUAG CAU CCCAA       AAAAUUUU UUUUUCUG           ACC G
UU               GA    A   A     UUUUUUU        G        ---UAUCCCUA   A
Stem-loop sequence AACCCAUAUGGAUUGGCAGUCCGUAGGGGUUUUUUUUUUAAAAAAAAAGAUUUUUUGCUAUAUGGACGACCAAUCCCUAUGUCUUUUUGUUUUAAAAUUUUUUUAACCCAUACAGAUUAGCAGUCCGUAUGGGUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT098305.1
ncRNA:24   UGCC----UGACGGUUAGGUAUACCCAA   1
  *=||----=|*|||=||||||||||||*
targets:834   UUGGUGAAGCCGCCGAUCCAUAUGGGUG   861

3.0 Soybean clone JCVI-FLGm-23G3 unknown mRNA NA coding protein psRNATarget