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BaseInfo

ncRNA ID bra-miR9561-5p
Species Brassica rapa
Class miRNA
Genome position chrA3:13865321-13865443 [-]
Reference genome Brapa_1.1
Source miRBase
Length 23
Mature sequence(if miRNA) 83 - UGAGUCUCUCACCAGUCUUUCAC - 105
Stem-loop(if miRNA) AAU GC   C     C         C   CC                          CG U
   G  CAU CGCAU GGUGAGUCU UCA  AGUCUUUCACUAAUUGUAUUAAUAUU  A U
   |  ||| ||||| ||||||||| |||  ||||||||||||||||||||||||||  |
   C  GUA GUGUA CCACUCAGA AGU  UCAGAGAGUGGUUAAUAUAAUUAUAA  U A
AAU UU   A     A         A   -C                          AU A
Stem-loop sequence AAUGGCCAUCCGCAUCGGUGAGUCUCUCACCAGUCUUUCACUAAUUGUAUUAAUAUUCGAUUAAUUAAAUAUUAAUAUAAUUGGUGAGAGACUCUGAAAGACUCACCAAUGUGAAUGUUCUAA

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).