ncRNA ID | bra-miR9561-5p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA3:13865321-13865443 [-] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 23 |
Mature sequence(if miRNA) | 83 - UGAGUCUCUCACCAGUCUUUCAC - 105 |
Stem-loop(if miRNA) |
AAU GC   C     C         C   CC                          CG U    G  CAU CGCAU GGUGAGUCU UCA  AGUCUUUCACUAAUUGUAUUAAUAUU  A U    |  ||| ||||| ||||||||| |||  ||||||||||||||||||||||||||  |    C  GUA GUGUA CCACUCAGA AGU  UCAGAGAGUGGUUAAUAUAAUUAUAA  U A AAU UU   A     A         A   -C                          AU A |
Stem-loop sequence | AAUGGCCAUCCGCAUCGGUGAGUCUCUCACCAGUCUUUCACUAAUUGUAUUAAUAUUCGAUUAAUUAAAUAUUAAUAUAAUUGGUGAGAGACUCUGAAAGACUCACCAAUGUGAAUGUUCUAA |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |