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BaseInfo

ncRNA ID novel_gma_miR563
Species Glycine max
Class miRNA
Genome position Chr4:18902764-18902916 [-]
Reference genome Glycine_max_v2.0
Source SRR1294478;SRR1451650;SRR1292924;SRR1294474
Length 21
Mature sequence(if miRNA) 133 - UCUCUCUGAAAUCUUCGACCU - 153
Stem-loop(if miRNA) --                      A          C           U   --GA   A   GA   C ----ACC   U
  UCUCUCUGAAAUCUUCGACCUC UCAACGAUGA GAUUUAAAGUC UCU    UGA GAA  CCU G       GCU C
  |||||||||||||||||||||| |||||||||| ||||||||||| |||    ||| |||  ||| |       |||
  AGAGAGACUUUAGAAGCUGGAG AGUUGCUACU CUAAAUUUCAG AGA    GCU CUU  GGA C       CGA A
AC                      C          U           U   AGCA   -   AA   A GAAACAA   A
Stem-loop sequence UCUCUCUGAAAUCUUCGACCUCAUCAACGAUGACGAUUUAAAGUCUUCUGAUGAAGAAGACCUCGACCGCUUCAAAGCAACAAAGCAAGGAAUUCUCGACGAAGAUGACUUUAAAUCUUCAUCGUUGACGAGGUCGAAGAUUUCAGAGAGACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003523708.3
ncRNA:21   UCCAGCUUCUAAAGUCUCUCU   1
  |*|||*|*|||||||||||||
targets:569   AUGUCUACGAUUUCAGAGAGA   589

2.0 PREDICTED: Glycine max uncharacterized LOC100782614 (LOC100782614), mRNA uncharacterized LOC100782614(LOC100782614) coding protein psRNATarget