Search result

BaseInfo

ncRNA ID	novel_gma_miR558
Species	Glycine max
Class	miRNA
Genome position	Chr14:1397426-1397485 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451632
Length	21
Mature sequence(if miRNA)	40 - UUGACCUUUCAUUACAACCGC - 60
Stem-loop(if miRNA)	--        -A  UA      ACCCUCUC   GGUUGUGA  AA  GUUAAU        G   ||||||||  ||  ||||||        A   CCAACAUU  UU  CAGUUA        G CG        AC  UC      CAUACCUC
Stem-loop sequence	GGUUGUGAAAAUAGUUAAUACCCUCUCGAGCUCCAUACAUUGACCUUUCAUUACAACCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014766554.1	ncRNA:21   CGCCAACAUUACUUUCCAGUU   1   |=||||||||||||||||||| targets:2270   GUGGUUGUAAUGAAAGGUCAA   2290 Target Full Sequence	0.0	PREDICTED: Glycine max receptor-like protein 12 (LOC100792033), mRNA	receptor-like protein 12(LOC100792033)	coding protein	psRNATarget
XM_006595748.2	ncRNA:21   CGCCAACAUUACUUUCCAGUU   1   |=||||||||||||||||||| targets:2276   GUGGUUGUAAUGAAAGGUCAA   2296 Target Full Sequence	0.0	PREDICTED: Glycine max receptor-like protein 12 (LOC100788346), mRNA	receptor-like protein 12(LOC100788346)	coding protein	psRNATarget
XM_014766926.1	ncRNA:21   CGCCAACAUUACUUUCCAGUU   1   |=||||||||||||||||||* targets:2145   GUGGUUGUAAUGAAAGGUCAU   2165 Target Full Sequence	1.0	PREDICTED: Glycine max receptor-like protein 12 (LOC100781942), mRNA	receptor-like protein 12(LOC100781942)	coding protein	psRNATarget
XM_014766927.1	ncRNA:21   CGCCAACAUUACUUUCCAGUU   1   |=||||||||||||||||||* targets:2147   GUGGUUGUAAUGAAAGGUCAU   2167 Target Full Sequence	1.0	PREDICTED: Glycine max receptor-like protein 12 (LOC106795977), mRNA	receptor-like protein 12(LOC106795977)	coding protein	psRNATarget
XM_014766928.1	ncRNA:21   CGCCAACAUUACUUUCCAGUU   1   |=|*||||||||||||||||| targets:2041   GUGAUUGUAAUGAAAGGUCAA   2061 Target Full Sequence	1.0	PREDICTED: Glycine max receptor-like protein 12 (LOC100784088), mRNA	receptor-like protein 12(LOC100784088)	coding protein	psRNATarget
FJ014848.1	ncRNA:21   CGCCAACAUUACUUUCCAGUU   1   |=|||||||||||||||||=* targets:1660   GUGGUUGUAAUGAAAGGUCGU   1680 Target Full Sequence	2.5	Glycine max clone cw171 disease resistance protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001248609.1	ncRNA:21   CGCCAACAUUACUUUCCAGUU   1   |=|||||||||||||||||=* targets:1660   GUGGUUGUAAUGAAAGGUCGU   1680 Target Full Sequence	2.5	Glycine max disease resistance protein (LOC100305448), mRNA	disease resistance protein(LOC100305448)	coding protein	psRNATarget