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BaseInfo

ncRNA ID ath-miR862-5p
Species Arabidopsis thaliana
Class miRNA
Genome position chr2:10718096-10718198 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UCCAAUAGGUCGAGCAUGUGC - 31
Stem-loop(if miRNA)             CAA      G                      -ACA  G
ACAGUAGUUUUC   UAGGUC AGCAUGUGCUGAAACUGUGUGU    GA U
||||||||||||   |||||| ||||||||||||||||||||||    ||
UGUCAUCAGAAG   AUCUAG UCGUAUACGACUUUGACACACA    CU U
            UUC      G                      AAUA  C
Stem-loop sequence ACAGUAGUUUUCCAAUAGGUCGAGCAUGUGCUGAAACUGUGUGUACAGAGUUCUCAUAAACACACAGUUUCAGCAUAUGCUGGAUCUACUUGAAGACUACUGU

Reference

1 PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes";
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC;
PLoS One. 2:e219(2007).
2 PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis";
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
J Exp Bot. 61:165-177(2010).