Search result

BaseInfo

ncRNA ID	novel_gma_miR553
Species	Glycine max
Class	miRNA
Genome position	Chr4:34341316-34341495 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1294478;SRR1294479;SRR2045232;SRR2045236
Length	24
Mature sequence(if miRNA)	157 - AACAACAAAAAAAGUGUAGGCAUG - 180
Stem-loop(if miRNA)	--A   A    AA            G  A                   C  U     C        UAU  -UAGU            UUC    ACA CAAA  AAGUGUAGGCAU AU AACGUUGACAUCGGUUUUC AG AAAAC GAUGUUAA   GU     UUAACAUCGGUU   U    ||| ||||  |||||||||||| || ||||||||||||||||||| || ||||| ||||||||   ||     ||||||||||||   A    UGU GUUU  UUCACAUUCGUA UA UUGCAACUGUAGCCAAAAG UC UUUUG CUACAAUU   CG     AAUUGUAGCUAA   G UGA   G    -A            G  G                   A  U     C        -CC  UAUGU            UAA
Stem-loop sequence	AACAACAAAAAAAGUGUAGGCAUGAUAAACGUUGACAUCGGUUUUCCAGUAAAACCGAUGUUAAUAUGUUAGUUUAACAUCGGUUUUCUAGAAUAAUCGAUGUUAAUGUAUGCCCUUAACAUCCGUUUUUCUAGAAAACCGAUGUCAACGUUGAUGAUGCUUACACUUAUUUGGUGUAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006603632.2	ncRNA:24   GUAC-----GGAUGUGAAAAAAACAACAA   1   =|||-----=*|==||||||||||||||| targets:1668   UAUGGAAGAUAUGUACUUUUUUUGUUGUU   1696 Target Full Sequence	3.0	PREDICTED: Glycine max O-acyltransferase WSD1-like (LOC100777968), transcript variant X1, mRNA	O-acyltransferase WSD1-like(LOC100777968)	coding protein	psRNATarget
NM_001254629.1	ncRNA:24   GUAC-----GGAUGUGAAAAAAACAACAA   1   =|||-----=*|==||||||||||||||| targets:1487   UAUGGAAGAUAUGUACUUUUUUUGUUGUU   1515 Target Full Sequence	3.0	Glycine max O-acyltransferase WSD1-like (LOC100777968), mRNA	O-acyltransferase WSD1-like(LOC100777968)	coding protein	psRNATarget
BT093717.1	ncRNA:24   GUAC-----GGAUGUGAAAAAAACAACAA   1   =|||-----=*|==||||||||||||||| targets:1487   UAUGGAAGAUAUGUACUUUUUUUGUUGUU   1515 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-24I8 unknown mRNA	NA	coding protein	psRNATarget