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BaseInfo

ncRNA ID novel_gma_miR541
Species Glycine max
Class miRNA
Genome position Chr10:3590220-3590287 [+]
Reference genome Glycine_max_v2.0
Source SRR1451631;SRR1451610
Length 21
Mature sequence(if miRNA) 1 - UCUUCAAAUUCUGUAUUACCU - 21
Stem-loop(if miRNA) --     A              --U G     GAU
  UCUUC AAUUCUGUAUUACC   U CAGCG   U
  ||||| ||||||||||||||   | |||||
  AGAGG UUAAGACAUAAUGG   A GUCGU   G
AC     C              CUU G     AGA
Stem-loop sequence UCUUCAAAUUCUGUAUUACCUUGCAGCGGAUUGAGAUGCUGGAUUCGGUAAUACAGAAUUCGGAGACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK245056.1
ncRNA:21   UCCAUUAUGUCUUAAACUUCU   1
  ||*||||*|||||||||||||
targets:945   AGAUAAUCCAGAAUUUGAAGA   965

2.0 Glycine max cDNA, clone: GMFL01-20-A10 NA coding protein psRNATarget
XM_003534452.3
ncRNA:21   UCCAUUAUGUCUUAAACUUCU   1
  ||*||||*|||||||||||||
targets:958   AGAUAAUCCAGAAUUUGAAGA   978

2.0 PREDICTED: Glycine max calreticulin-3 (LOC100776652), mRNA calreticulin-3(LOC100776652) coding protein psRNATarget
XM_014771414.1
ncRNA:21   UCCAUUAUGUCUUAAACUUCU   1
  |**|||||*||||||||||||
targets:2692   AAAUAAUAGAGAAUUUGAAGA   2712

2.5 PREDICTED: Glycine max histone acetyltransferase HAC12-like (LOC102664049), mRNA histone acetyltransferase HAC12-like(LOC102664049) coding protein psRNATarget