ncRNA ID | novel_gma_miR541 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr10:3590220-3590287 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451631;SRR1451610 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UCUUCAAAUUCUGUAUUACCU - 21 |
Stem-loop(if miRNA) |
--     A              --U G     GAU   UCUUC AAUUCUGUAUUACC   U CAGCG   U   ||||| ||||||||||||||   | |||||   AGAGG UUAAGACAUAAUGG   A GUCGU   G AC     C              CUU G     AGA |
Stem-loop sequence | UCUUCAAAUUCUGUAUUACCUUGCAGCGGAUUGAGAUGCUGGAUUCGGUAAUACAGAAUUCGGAGACA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK245056.1 |
|
2.0 | Glycine max cDNA, clone: GMFL01-20-A10 | NA | coding protein | psRNATarget | |||||||||
XM_003534452.3 |
|
2.0 | PREDICTED: Glycine max calreticulin-3 (LOC100776652), mRNA | calreticulin-3(LOC100776652) | coding protein | psRNATarget | |||||||||
XM_014771414.1 |
|
2.5 | PREDICTED: Glycine max histone acetyltransferase HAC12-like (LOC102664049), mRNA | histone acetyltransferase HAC12-like(LOC102664049) | coding protein | psRNATarget |