ncRNA ID | bra-miR398-3p |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA3:2736128-2736251 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 89 - UGUGUUCUCAGGUCACCCCUG - 109 |
Stem-loop(if miRNA) |
----GU   C    A     UC   A             UAAUC     C  ----------               GGA CUCG CAGGG  GAC UGAGAACACAUGG     AAAGA UG          UAAUGACGC       ||| |||| |||||  ||| |||||||||||||     ||||| ||          ||||||||C       UCU GAGU GUCCC  CUG ACUCUUGUGUACU     UUUCU AC          GUUACUGCA UCUCUU   C    C     CA   G             -----     C  UACAUACAAU         |
Stem-loop sequence | GUGGACCUCGACAGGGUCGACAUGAGAACACAUGGUAAUCAAAGACUGUAAUGACGCCACGUCAUUGUAACAUACAUCACUCUUUUCAUGUGUUCUCAGGUCACCCCUGCUGAGCUCUUUCUCU |
1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |