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BaseInfo

ncRNA ID bra-miR398-3p
Species Brassica rapa
Class miRNA
Genome position chrA3:2736128-2736251 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 89 - UGUGUUCUCAGGUCACCCCUG - 109
Stem-loop(if miRNA) ----GU   C    A     UC   A             UAAUC     C  ----------        
      GGA CUCG CAGGG  GAC UGAGAACACAUGG     AAAGA UG          UAAUGACGC
      ||| |||| |||||  ||| |||||||||||||     ||||| ||          ||||||||C
      UCU GAGU GUCCC  CUG ACUCUUGUGUACU     UUUCU AC          GUUACUGCA
UCUCUU   C    C     CA   G             -----     C  UACAUACAAU        
Stem-loop sequence GUGGACCUCGACAGGGUCGACAUGAGAACACAUGGUAAUCAAAGACUGUAAUGACGCCACGUCAUUGUAACAUACAUCACUCUUUUCAUGUGUUCUCAGGUCACCCCUGCUGAGCUCUUUCUCU

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).