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BaseInfo

ncRNA ID novel_gma_miR525
Species Glycine max
Class miRNA
Genome position Chr5:4828676-4828740 [-]
Reference genome Glycine_max_v2.0
Source SRR1451631
Length 23
Mature sequence(if miRNA) 1 - AACACUUCUUCCGGAAACUUCUU - 23
Stem-loop(if miRNA) --CAAC                         A
      UUUCCGGAAGAAGUGUUCUUCCGGA U
      ||||||||||||||||||||||||| A
      AAAGGCCUUCUUCACAAGAAGGCUU A
UUCUUC                         U
Stem-loop sequence CAACUUUCCGGAAGAAGUGUUCUUCCGGAAUAAUUUCGGAAGAACACUUCUUCCGGAAACUUCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003527693.3
ncRNA:23   UU---CUUCAAAGGCCUUCUUCACAA   1
  ||---|||*|||||||||||||||||
targets:895   AAUUUGAAAUUUCCGGAAGAAGUGUU   920

1.0 PREDICTED: Glycine max uncharacterized LOC100801926 (LOC100801926), mRNA uncharacterized LOC100801926(LOC100801926) coding protein psRNATarget
XM_014771083.1
ncRNA:23   UUCUUCAAAGGCCUUCUUCACAA   1
  *||=|*||||*||||||||||||
targets:444   CAGGACUUUCAGGAAGAAGUGUU   466

2.5 PREDICTED: Glycine max uncharacterized protein At4g13200, chloroplastic-like (LOC100813568), transcript variant X2, mRNA uncharacterized protein At4g13200, chloroplastic-like(LOC100813568) coding protein psRNATarget
XM_003552033.3
ncRNA:23   UUCUUCAAAGGCCUUCUUCACAA   1
  *||=|*||||*||||||||||||
targets:444   CAGGACUUUCAGGAAGAAGUGUU   466

2.5 PREDICTED: Glycine max uncharacterized protein At4g13200, chloroplastic-like (LOC100813568), transcript variant X1, mRNA uncharacterized protein At4g13200, chloroplastic-like(LOC100813568) coding protein psRNATarget
XM_014772428.1
ncRNA:23   UUCUUCAAAGGCCUUCUUCA-CAA   1
  |**|||||||||||||||||-|||
targets:161   AUAAAGUUUCCGGAAGAAGUAGUU   184

3.0 PREDICTED: Glycine max uncharacterized LOC102661169 (LOC102661169), mRNA uncharacterized LOC102661169(LOC102661169) coding protein psRNATarget