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BaseInfo

ncRNA ID bra-miR1140
Species Brassica rapa
Class miRNA
Genome position chrA3:683631-683805 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 131 - ACAGCCUAAACCAAUCGGAGC - 151
Stem-loop(if miRNA) UC    ---GUUCU    A  UUUUA               C                 U      CUUU     GUCUUCAAAAUUUAGUUU
  CCCU        CUCA UC     UAUGGCUCCGAUUGG UUUAGGCUGUUGUGGCU UGACUU    CUAAA                  U
  ||||        |||| ||     ||||||||||||||| ||||||||||||||||| ||||||    |||||                  U
  GGGA        GAGU AG     GUACCGAGGCUAACC AAAUCCGACAACACCGA ACUGAA    AAUUU                  C
--    AUGUUCUU    -  ---UG               -                 C      ----     UUUUAAAUUGCACUAACA
Stem-loop sequence UCCCCUGUUCUCUCAAUCUUUUAUAUGGCUCCGAUUGGCUUUAGGCUGUUGUGGCUUUGACUUCUUUCUAAAGUCUUCAAAAUUUAGUUUUUCACAAUCACGUUAAAUUUUUUUAAAAGUCACAGCCACAACAGCCUAAACCAAUCGGAGCCAUGGUGAUGAGUUCUUGUAAGGG

Reference

1 PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa";
Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y;
J Exp Bot. 63:1025-1038(2012).
2 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).