ncRNA ID | bra-miR1140 |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA3:683631-683805 [+] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 131 - ACAGCCUAAACCAAUCGGAGC - 151 |
Stem-loop(if miRNA) |
UC    ---GUUCU    A  UUUUA               C                 U      CUUU     GUCUUCAAAAUUUAGUUU   CCCU        CUCA UC     UAUGGCUCCGAUUGG UUUAGGCUGUUGUGGCU UGACUU    CUAAA                  U   ||||        |||| ||     ||||||||||||||| ||||||||||||||||| ||||||    |||||                  U   GGGA        GAGU AG     GUACCGAGGCUAACC AAAUCCGACAACACCGA ACUGAA    AAUUU                  C --    AUGUUCUU    -  ---UG               -                 C      ----     UUUUAAAUUGCACUAACA |
Stem-loop sequence | UCCCCUGUUCUCUCAAUCUUUUAUAUGGCUCCGAUUGGCUUUAGGCUGUUGUGGCUUUGACUUCUUUCUAAAGUCUUCAAAAUUUAGUUUUUCACAAUCACGUUAAAUUUUUUUAAAAGUCACAGCCACAACAGCCUAAACCAAUCGGAGCCAUGGUGAUGAGUUCUUGUAAGGG |
1 | PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa"; Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y; J Exp Bot. 63:1025-1038(2012). |
2 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |