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BaseInfo

ncRNA ID novel_gma_miR506
Species Glycine max
Class miRNA
Genome position Chr20:777544-777669 [-]
Reference genome Glycine_max_v2.0
Source SRR1451631;SRR1451633;SRR1451634;SRR1451648;SRR1451654;SRR835772;SRR1451625
Length 21
Mature sequence(if miRNA) 1 - UUCGUUUUCUUCAUCUUUUUC - 21
Stem-loop(if miRNA) --                   A  --      --------  UCUGAGUGUGAAGCAAAAAUUCUUCC
  AGAAGGUGAAGGAAGUGAG GU  GGAGUA        GA                          A
  ||||||||||||||||||| ||  ||||||        ||
  UUUUCUACUUCUUUUGCUU CA  UCUCGU        UC                          A
CU                   C  AG      AAAAAAAA  CUGGGAAACUAACUUUCUACUUUUGA
Stem-loop sequence AGAAGGUGAAGGAAGUGAGAGUGGAGUAGAUCUGAGUGUGAAGCAAAAAUUCUUCCAAAGUUUUCAUCUUUCAAUCAAAGGGUCCUAAAAAAAAUGCUCUGAACCUUCGUUUUCUUCAUCUUUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006602072.2
ncRNA:21   CUUUUUCUACUUCUUUUGCUU   1
  *|=|||||||||||||||||=
targets:1666   AAGAAAGAUGAAGAAAACGAG   1686

2.0 PREDICTED: Glycine max myb-like protein X (LOC100818537), transcript variant X1, mRNA myb-like protein X(LOC100818537) coding protein psRNATarget
XM_003551397.3
ncRNA:21   CUUUUUCUACUUCUUUUGCUU   1
  *|=|||||||||||||||||=
targets:1666   AAGAAAGAUGAAGAAAACGAG   1686

2.0 PREDICTED: Glycine max myb-like protein X (LOC100818537), transcript variant X2, mRNA myb-like protein X(LOC100818537) coding protein psRNATarget
XM_014779437.1
ncRNA:21   CUUUUUCUACUUCUUUUGCUU   1
  *|=|||||||||||||||||=
targets:1743   AAGAAAGAUGAAGAAAACGAG   1763

2.0 PREDICTED: Glycine max nucleolin-like (LOC100812631), transcript variant X1, mRNA nucleolin-like(LOC100812631) coding protein psRNATarget
XM_006586073.2
ncRNA:21   CUUUUUCUACUUCUUUUGCUU   1
  *|=|||||||||||||||||=
targets:1743   AAGAAAGAUGAAGAAAACGAG   1763

2.0 PREDICTED: Glycine max nucleolin-like (LOC100812631), transcript variant X2, mRNA nucleolin-like(LOC100812631) coding protein psRNATarget
XM_003550462.3
ncRNA:21   CUUUUUCUACUUCUUUUGCUU   1
  ||=|||*||||||||||||||
targets:1207   GAGAAAAAUGAAGAAAACGAA   1227

2.0 PREDICTED: Glycine max DUF21 domain-containing protein At4g14240-like (LOC100779491), mRNA DUF21 domain-containing protein At4g14240-like(LOC100779491) coding protein psRNATarget
XM_014772078.1
ncRNA:21   CUUUUUCUACUUCUUUUGCUU   1
  |||||||=|||||||||*|||
targets:5579   GAAAAAGGUGAAGAAAAGGAA   5599

2.5 PREDICTED: Glycine max piezo-type mechanosensitive ion channel homolog (LOC100813960), mRNA piezo-type mechanosensitive ion channel homolog(LOC100813960) coding protein psRNATarget
XM_014762764.1
ncRNA:21   CUUUUUCUACUUCUUUUGCUU   1
  |||||||*|||||||||=|||
targets:795   GAAAAAGUUGAAGAAAAUGAA   815

2.5 PREDICTED: Glycine max disease resistance protein RPP4-like (LOC102669784), mRNA disease resistance protein RPP4-like(LOC102669784) coding protein psRNATarget
XM_006595690.2
ncRNA:21   CUUUUUCUACUUCUUUUGCUU   1
  |||=|||||||||||||*|||
targets:481   GAAGAAGAUGAAGAAAAAGAA   501

2.5 PREDICTED: Glycine max transcription factor PAR1-like (LOC100817215), mRNA transcription factor PAR1-like(LOC100817215) coding protein psRNATarget
KT031122.1
ncRNA:21   CUUUUUCUACUUCUUUUGCUU   1
  |||=|||||||||||||*|||
targets:184   GAAGAAGAUGAAGAAAAAGAA   204

2.5 Glycine max clone HN_CCL_64 bHLH transcription factor (Glyma14g03180.1) mRNA, partial cds NA coding protein psRNATarget
XM_006593152.1
ncRNA:21   CUUUUUCUACUUCUUUUGCUU   1
  |=|*|||||||||||=|||||
targets:961   GGACAAGAUGAAGAAGACGAA   981

2.5 PREDICTED: Glycine max uncharacterized LOC102668698 (LOC102668698), mRNA uncharacterized LOC102668698(LOC102668698) coding protein psRNATarget
XM_006606049.2
ncRNA:21   CUUUUUCUACUUCUUUUGCUU   1
  *||||||*|||=|||||||||
targets:2262   CAAAAAGUUGAGGAAAACGAA   2282

2.5 PREDICTED: Glycine max early endosome antigen 1-like (LOC100782613), transcript variant X1, mRNA early endosome antigen 1-like(LOC100782613) coding protein psRNATarget
XM_014772861.1
ncRNA:21   CUUUUUCUACUUCUUUUGCUU   1
  *||||||*|||=|||||||||
targets:2172   CAAAAAGUUGAGGAAAACGAA   2192

2.5 PREDICTED: Glycine max early endosome antigen 1-like (LOC100782613), transcript variant X2, mRNA early endosome antigen 1-like(LOC100782613) coding protein psRNATarget
BT094891.1
ncRNA:21   CUUUUUCUACUUCUUUUGCUU   1
  *|=||||||||||||||*|||
targets:1061   AAGAAAGAUGAAGAAAAGGAA   1081

2.5 Soybean clone JCVI-FLGm-6K6 unknown mRNA NA coding protein psRNATarget