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BaseInfo

ncRNA ID novel_gma_miR497
Species Glycine max
Class miRNA
Genome position Chr19:3494797-3494878 [-]
Reference genome Glycine_max_v2.0
Source SRR1451631;SRR1451658
Length 21
Mature sequence(if miRNA) 62 - CUGUUUUCAAAGAUUUGUACA - 82
Stem-loop(if miRNA) --        AAA          --    ---    UG    C
  CUGUUUUC   GAUUUGUACA  AGAC   ACAA  AAAG G
  ||||||||   ||||||||||  ||||   ||||  |||| A
  GACAAAAG   CUAAACAUGU  UUUG   UGUU  UUUC U
AG        CUG          CC    UCU    GU    U
Stem-loop sequence CUGUUUUCAAAGAUUUGUACAAGACACAAUGAAAGCGAUUCUUUUGUUGUUCUGUUUCCUGUACAAAUCGUCGAAAACAGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006604078.2
ncRNA:21   ACAUGUUUAGAAACUUUUGUC   1
  **|*|||||||||||||||||
targets:304   GUUUCAAAUCUUUGAAAACAG   324

1.0 PREDICTED: Glycine max putative nuclease HARBI1 (LOC102660080), mRNA putative nuclease HARBI1(LOC102660080) coding protein psRNATarget
BT095359.1
ncRNA:21   ACAUGUUUAGAAACUUUUGUC   1
  *||*|||*|||||||||||||
targets:480   GGUUCAACUCUUUGAAAACAG   500

2.0 Soybean clone JCVI-FLGm-7O23 unknown mRNA NA coding protein psRNATarget
XM_014772170.1
ncRNA:21   ACAU--GUUUAGAAACUUUUGUC   1
  |*||--|||||||||||||||||
targets:1484   UCUAUUCAAAUCUUUGAAAACAG   1506

2.5 PREDICTED: Glycine max F-box protein At5g03970-like (LOC100810374), transcript variant X2, mRNA F-box protein At5g03970-like(LOC100810374) coding protein psRNATarget
XM_003554667.3
ncRNA:21   ACAU--GUUUAGAAACUUUUGUC   1
  |*||--|||||||||||||||||
targets:1485   UCUAUUCAAAUCUUUGAAAACAG   1507

2.5 PREDICTED: Glycine max F-box protein At5g03970-like (LOC100810374), transcript variant X1, mRNA F-box protein At5g03970-like(LOC100810374) coding protein psRNATarget
XM_014761829.1
ncRNA:21   ACAUGUUUAGAAACUUUUGUC   1
  |||**|||||||||||||||*
targets:1251   UGUUGAAAUCUUUGAAAACAU   1271

3.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like (LOC100818701), mRNA pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like(LOC100818701) coding protein psRNATarget