Search result

BaseInfo

ncRNA ID novel_gma_miR493
Species Glycine max
Class miRNA
Genome position Chr19:45785464-45785516 [+]
Reference genome Glycine_max_v2.0
Source SRR1451631;SRR1451640
Length 24
Mature sequence(if miRNA) 30 - AACGACAUCAGUUUUUAAAUAACU - 53
Stem-loop(if miRNA) --            C        -  G
  UUAUUUAAAAAU GAUGUUGU AA U
  |||||||||||| |||||||| ||
  AAUAAAUUUUUG CUACAGCA UU G
UC            A        A  A
Stem-loop sequence UUAUUUAAAAAUCGAUGUUGUAAGUGAUUAACGACAUCAGUUUUUAAAUAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014764817.1
ncRNA:24   UCAAUAAAUUUUUGACUACAGCAA   1
  **||||||||||||||||||=|||
targets:43   UUUUAUUUAAAAACUGAUGUUGUU   66

1.5 PREDICTED: Glycine max uncharacterized LOC102659453 (LOC102659453), mRNA uncharacterized LOC102659453(LOC102659453) coding protein psRNATarget
XM_003536677.3
ncRNA:24   UCAA--UAAAUUUUUGACUACAGCAA   1
  *|||--||||||||||||=|||||||
targets:185   CGUUUCAUUUAAAAACUGGUGUCGUU   210

1.5 PREDICTED: Glycine max transportin-1-like (LOC100792837), mRNA transportin-1-like(LOC100792837) coding protein psRNATarget