| ncRNA ID | bra-miR5721 |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | chrA2:24366844-24367021 [-] |
| Reference genome | Brapa_1.1 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 125 - AAAAAUGGAGUGAGAAAUGGA - 145 |
| Stem-loop(if miRNA) |
------- C C CCA AG - ---- UAAAAAAU A GGGCAU UUUAUC CCACUCCAUAAUUUACU AAAAUGGAGUG AAAUGGAGUA UG GACAAAAAA CUUUAU U |||||| |||||| ||||||||||||||||| ||||||||||| |||||||||| || ||||||||| |||||| CUCGUA AAGUAG GGUGAGGUAUUAAAUGA UUUUACCUCAC UUUACUUCAU AC UUGUUUUUU GAGGUA U AAUGAUU A A -CG CU C UUCU -CACUAAU U |
| Stem-loop sequence | GGGCAUCUUUAUCCCCACUCCAUAAUUUACUCCAAAAAUGGAGUGAGAAAUGGAGUAUGGACAAAAAAUAAAAAAUCUUUAUAUUUAUGGAGUAAUCACUUUUUUGUUUCUUCACUACUUCAUUUUCCACUCCAUUUUGCAGUAAAUUAUGGAGUGGAGAUGAAAAUGCUCUUAGUAA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009127019.2 |
|
2.5 | PREDICTED: Brassica rapa chorismate mutase 2 (LOC103850294), mRNA | chorismate mutase 2(LOC103850294) | coding protein | psRNATarget |
| 1 | PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa"; Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y; J Exp Bot. 63:1025-1038(2012). |