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BaseInfo

ncRNA ID novel_gma_miR476
Species Glycine max
Class miRNA
Genome position Chr10:51507123-51507238 [-]
Reference genome Glycine_max_v2.0
Source SRR1451631;SRR1451649;SRR835758
Length 21
Mature sequence(if miRNA) 96 - UAAACUAAAAUCAACUUAUGC - 116
Stem-loop(if miRNA) --                         -AAUUUUUAU       -   CUCAUUUAACU
  UAAACUAAAAUCAACUUAUGCAUUU          AGAAGUU CUU           U
  |||||||||||||||||||||||||          ||||||| |||
  AUUUGAUUUUAGUUGAAUAUGUGGA          UCUUCAA GGA           G
GU                         AUCGUACAAC       U   AUCUUACACCU
Stem-loop sequence UAAACUAAAAUCAACUUAUGCAUUUAAUUUUUAUAGAAGUUCUUCUCAUUUAACUUGUCCACAUUCUAAGGUAACUUCUCAACAUGCUAAGGUGUAUAAGUUGAUUUUAGUUUAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003518975.3
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  *||||||||||||||||||||
targets:1116   ACAUAAGUUGAUUUUAGUUUA   1136

0.0 PREDICTED: Glycine max binding partner of ACD11 1 (LOC100805907), transcript variant X3, mRNA binding partner of ACD11 1(LOC100805907) coding protein psRNATarget
XM_006574485.2
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  *||||||||||||||||||||
targets:1137   ACAUAAGUUGAUUUUAGUUUA   1157

0.0 PREDICTED: Glycine max binding partner of ACD11 1 (LOC100805907), transcript variant X2, mRNA binding partner of ACD11 1(LOC100805907) coding protein psRNATarget
XM_006574484.2
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  *||||||||||||||||||||
targets:1149   ACAUAAGUUGAUUUUAGUUUA   1169

0.0 PREDICTED: Glycine max binding partner of ACD11 1 (LOC100805907), transcript variant X1, mRNA binding partner of ACD11 1(LOC100805907) coding protein psRNATarget
BT095764.1
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  *|||||||||||||||||||=
targets:1066   ACAUAAGUUGAUUUUAGUUUG   1086

1.0 Soybean clone JCVI-FLGm-15K19 unknown mRNA NA coding protein psRNATarget
XM_003527585.2
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  ||*||||||||||||||||||
targets:2218   GCCUAAGUUGAUUUUAGUUUA   2238

1.0 PREDICTED: Glycine max MLO-like protein 9 (LOC100780855), mRNA MLO-like protein 9(LOC100780855) coding protein psRNATarget
XM_006574366.2
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  |||||||||||||||||*|||
targets:1399   GCAUAAGUUGAUUUUAGCUUA   1419

1.5 PREDICTED: Glycine max uncharacterized LOC100798622 (LOC100798622), transcript variant X1, mRNA uncharacterized LOC100798622(LOC100798622) coding protein psRNATarget
XM_003543801.3
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  *=||||*|||||||||||||=
targets:3101   AUAUAAUUUGAUUUUAGUUUG   3121

2.0 PREDICTED: Glycine max ATP-dependent RNA helicase SUV3L, mitochondrial (LOC100777114), mRNA ATP-dependent RNA helicase SUV3L, mitochondrial(LOC100777114) coding protein psRNATarget
BT096548.1
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  |||||||||*||||||||||*
targets:449   GCAUAAGUUAAUUUUAGUUUC   469

2.5 Soybean clone JCVI-FLGm-20H12 unknown mRNA NA coding protein psRNATarget
AK286967.1
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  *|=||||||||||||||*|||
targets:563   UCGUAAGUUGAUUUUAGCUUA   583

2.5 Glycine max cDNA, clone: GMFL01-41-C10 NA coding protein psRNATarget
XM_014766381.1
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  *||||||||*||||||||||*
targets:1930   UCAUAAGUUUAUUUUAGUUUC   1950

2.5 PREDICTED: Glycine max uncharacterized LOC100796411 (LOC100796411), transcript variant X3, mRNA uncharacterized LOC100796411(LOC100796411) coding protein psRNATarget
XM_014766380.1
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  *||||||||*||||||||||*
targets:1948   UCAUAAGUUUAUUUUAGUUUC   1968

2.5 PREDICTED: Glycine max uncharacterized LOC100796411 (LOC100796411), transcript variant X2, mRNA uncharacterized LOC100796411(LOC100796411) coding protein psRNATarget
HQ651808.1
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  **||||*||||||||=|||||
targets:1264   AAAUAAAUUGAUUUUGGUUUA   1284

2.5 Glycine max isoliquiritigenin 2'-O-methyltransferase mRNA, complete cds NA coding protein psRNATarget
NM_001254045.1
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  **||||*||||||||=|||||
targets:1264   AAAUAAAUUGAUUUUGGUUUA   1284

2.5 Glycine max isoliquiritigenin 2'-O-methyltransferase-like (LOC100798347), mRNA isoliquiritigenin 2'-O-methyltransferase-like(LOC100798347) coding protein psRNATarget
XM_003544002.3
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  *||||*||||||*||||||||
targets:1241   ACAUAUGUUGAUAUUAGUUUA   1261

2.5 PREDICTED: Glycine max abscisic acid receptor PYL4-like (LOC100804400), mRNA abscisic acid receptor PYL4-like(LOC100804400) coding protein psRNATarget
XM_003517361.3
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  *=|||*||||||*||||||||
targets:1357   UUAUAUGUUGAUAUUAGUUUA   1377

2.5 PREDICTED: Glycine max palmitoyl-protein thioesterase 1-like (LOC100809770), transcript variant X2, mRNA palmitoyl-protein thioesterase 1-like(LOC100809770) coding protein psRNATarget
XM_014776611.1
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  *=|||*||||||*||||||||
targets:1460   UUAUAUGUUGAUAUUAGUUUA   1480

2.5 PREDICTED: Glycine max palmitoyl-protein thioesterase 1-like (LOC100809770), transcript variant X1, mRNA palmitoyl-protein thioesterase 1-like(LOC100809770) coding protein psRNATarget
XM_003519470.3
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  *=|||*|||*|||||||||||
targets:1619   AUAUAUGUUUAUUUUAGUUUA   1639

2.5 PREDICTED: Glycine max N-acetyl-D-glucosamine kinase (LOC100808568), mRNA N-acetyl-D-glucosamine kinase(LOC100808568) coding protein psRNATarget
XM_006604032.2
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  |**|=|||||||||||||||=
targets:880   GGUUGAGUUGAUUUUAGUUUG   900

3.0 PREDICTED: Glycine max kinase D-interacting substrate of 220 kDa-like (LOC100805213), mRNA kinase D-interacting substrate of 220 kDa-like(LOC100805213) coding protein psRNATarget
XM_006593880.2
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  **=*||||||||||||||||=
targets:3038   AAGAAAGUUGAUUUUAGUUUG   3058

3.0 PREDICTED: Glycine max phospholipid:diacylglycerol acyltransferase 1-like (LOC100779225), transcript variant X3, mRNA phospholipid:diacylglycerol acyltransferase 1-like(LOC100779225) coding protein psRNATarget
XM_003541248.3
ncRNA:21   CGUAUUCAACUAAAAUCAAAU   1
  **=*||||||||||||||||=
targets:3192   AAGAAAGUUGAUUUUAGUUUG   3212

3.0 PREDICTED: Glycine max phospholipid:diacylglycerol acyltransferase 1-like (LOC100779225), transcript variant X1, mRNA phospholipid:diacylglycerol acyltransferase 1-like(LOC100779225) coding protein psRNATarget
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