ncRNA ID | bra-miR5723 |
Species | Brassica rapa |
Class | miRNA |
Genome position | chrA2:22331161-22331323 [-] |
Reference genome | Brapa_1.1 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 120 - AAUGUGCUGCAAUAUCUCUGC - 140 |
Stem-loop(if miRNA) |
---        C                                    AACAUUGUUUUUUU      GCUUUUGUGCUGUAUCAUUU    GCUAUGGA UUCCACCUUCGUGAAAUGUGCUGCAAUAUCUCUGCA              UCAUUU                    G    |||||||| ||||||||||||||||||||||||||||||||||||              ||||||    CGAUACCU AAGGUGGAAGCACUUUACACGACGUUAUAGAGACGU              UUUGAU                    A ACA        U                                    ------------CU      UAGAUCAAAUAUCGGUAGAU |
Stem-loop sequence | GCUAUGGACUUCCACCUUCGUGAAAUGUGCUGCAAUAUCUCUGCAAACAUUGUUUUUUUUCAUUUGCUUUUGUGCUGUAUCAUUUGAUAGAUGGCUAUAAACUAGAUUAGUUUUCUGCAGAGAUAUUGCAGCACAUUUCACGAAGGUGGAAUUCCAUAGCACA |
1 | PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa"; Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y; J Exp Bot. 63:1025-1038(2012). |