Search result

BaseInfo

ncRNA ID bra-miR5723
Species Brassica rapa
Class miRNA
Genome position chrA2:22331161-22331323 [-]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 120 - AAUGUGCUGCAAUAUCUCUGC - 140
Stem-loop(if miRNA) ---        C                                    AACAUUGUUUUUUU      GCUUUUGUGCUGUAUCAUUU
   GCUAUGGA UUCCACCUUCGUGAAAUGUGCUGCAAUAUCUCUGCA              UCAUUU                    G
   |||||||| ||||||||||||||||||||||||||||||||||||              ||||||
   CGAUACCU AAGGUGGAAGCACUUUACACGACGUUAUAGAGACGU              UUUGAU                    A
ACA        U                                    ------------CU      UAGAUCAAAUAUCGGUAGAU
Stem-loop sequence GCUAUGGACUUCCACCUUCGUGAAAUGUGCUGCAAUAUCUCUGCAAACAUUGUUUUUUUUCAUUUGCUUUUGUGCUGUAUCAUUUGAUAGAUGGCUAUAAACUAGAUUAGUUUUCUGCAGAGAUAUUGCAGCACAUUUCACGAAGGUGGAAUUCCAUAGCACA

Reference

1 PMID:22025521
"Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa";
Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y;
J Exp Bot. 63:1025-1038(2012).