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BaseInfo

ncRNA ID novel_gma_miR470
Species Glycine max
Class miRNA
Genome position Chr10:42226767-42226832 [+]
Reference genome Glycine_max_v2.0
Source SRR1451631
Length 19
Mature sequence(if miRNA) 48 - CUAAUUCAGAAUGUAGUUU - 66
Stem-loop(if miRNA) --                    ACG UAAAAAU
  AUUACAUUCUGAAUUAGCCU   C       U
  ||||||||||||||||||||   |
  UGAUGUAAGACUUAAUCGGA   G       U
UU                    AAA UCUUAUA
Stem-loop sequence AUUACAUUCUGAAUUAGCCUACGCUAAAAAUUUAUAUUCUGAAAAGGCUAAUUCAGAAUGUAGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014779445.1
ncRNA:19   UUUGAUGUAAGACUUAAUC   1
  |||=|||||||||=|||||
targets:321   AAAUUACAUUCUGGAUUAG   339

2.5 PREDICTED: Glycine max poly(A)-specific ribonuclease PARN-like (LOC100784997), transcript variant X2, mRNA poly(A)-specific ribonuclease PARN-like(LOC100784997) coding protein psRNATarget
XM_003530754.3
ncRNA:19   UUUGAUGUAAGACUUAAUC   1
  |||=|||||||||=|||||
targets:339   AAAUUACAUUCUGGAUUAG   357

2.5 PREDICTED: Glycine max poly(A)-specific ribonuclease PARN-like (LOC100784997), transcript variant X1, mRNA poly(A)-specific ribonuclease PARN-like(LOC100784997) coding protein psRNATarget
XM_006597023.2
ncRNA:19   UUUGAUGUAAGACUUAAUC   1
  |||=|||||||||=|||||
targets:4205   AAAUUACAUUCUGGAUUAG   4223

2.5 PREDICTED: Glycine max calcium-transporting ATPase 9, plasma membrane-type-like (LOC100802659), mRNA calcium-transporting ATPase 9, plasma membrane-type-like(LOC100802659) coding protein psRNATarget