Search result

BaseInfo

ncRNA ID novel_gma_miR469
Species Glycine max
Class miRNA
Genome position Chr15:45578075-45578178 [-]
Reference genome Glycine_max_v2.0
Source SRR1451631;SRR1451660
Length 24
Mature sequence(if miRNA) 1 - UUUUCAGUUGGCUAUAAGAGUGAC - 24
Stem-loop(if miRNA) --   A   U    UG   AU    -       UUU       A    UC  U
  CAU UUU UGGU  GCU  GAGA GUGACUU   AAGUCAU UUUU  GG U
  ||| ||| ||||  |||  |||| |||||||   ||||||| ||||  ||
  GUG GAA AUCG  UGA  UUUU UACUGAA   UUCAGUG AGAG  UC G
CA   A   U    GU   CU    A       UUU       -    UA  G
Stem-loop sequence CAUAUUUUUGGUUGGCUAUGAGAGUGACUUUUUAAGUCAUAUUUUUCGGUUGGCUAUGAGAGUGACUUUUUAAGUCAUAUUUUUCAGUUGGCUAUAAGAGUGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006589458.2
ncRNA:24   CAGUGAGAAUAUCGGUUGACUUUU   1
  ||||||||*|||||||||*|||||
targets:671   GUCACUCUAAUAGCCAACCGAAAA   694

2.5 PREDICTED: Glycine max uncharacterized LOC100793876 (LOC100793876), mRNA uncharacterized LOC100793876(LOC100793876) coding protein psRNATarget
XM_006589458.2
ncRNA:24   CAGUGAGAAUAUCGGUUGACUUUU   1
  ||=|||*|||||||||||*|||||
targets:784   GUUACUAUUAUAGCCAACCGAAAA   807

2.5 PREDICTED: Glycine max uncharacterized LOC100793876 (LOC100793876), mRNA uncharacterized LOC100793876(LOC100793876) coding protein psRNATarget