Search result

BaseInfo

ncRNA ID novel_gma_miR462
Species Glycine max
Class miRNA
Genome position Chr14:12591108-12591211 [-]
Reference genome Glycine_max_v2.0
Source SRR1451631
Length 24
Mature sequence(if miRNA) 81 - UAACCGUCUUUGAAUGUAGUGUCU - 104
Stem-loop(if miRNA) --    C     U        UG  U   U GA                  A
  UAAC GUCUU GAAUGUAG  UC GAU C  CAUUCAAAGACGGUUAUU C
  |||| ||||| ||||||||  || ||| |  ||||||||||||||||||
  AUUG CAGAA UUUACAUC  GG CUG G  GUAAGUUUCUGCCAAUAA A
UU    A     C        UU  U   U AC                  U
Stem-loop sequence UAACCGUCUUUGAAUGUAGUGUCUGAUUCGACAUUCAAAGACGGUUAUUACAUAAUAACCGUCUUUGAAUGCAGUGUCUGGUUCUACAUUUCAAGACAGUUAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014775607.1
ncRNA:24   UCUGUGAUGUAAGUUUCUGCCAAU   1
  |||*=|*|||||||||||||||||
targets:1536   AGAAGCAACAUUCAAAGACGGUUA   1559

1.0 PREDICTED: Glycine max protein MOR1 (LOC102659664), transcript variant X1, mRNA protein MOR1(LOC102659664) coding protein psRNATarget
XM_014775607.1
ncRNA:24   UCUGUGAUGUAAGUUUCUGCCAAU   1
  |||||=*|||||||||||||||||
targets:1481   AGACAUAACAUUCAAAGACGGUUA   1504

2.0 PREDICTED: Glycine max protein MOR1 (LOC102659664), transcript variant X1, mRNA protein MOR1(LOC102659664) coding protein psRNATarget
XM_003534913.2
ncRNA:24   UCUGUGAUGUAAGUUUCUGCCAAU   1
  |||=**||*=||||||||||||||
targets:130   AGAUUGUAAGUUCAAAGACGGUUA   153

3.0 PREDICTED: Glycine max uncharacterized LOC100781107 (LOC100781107), mRNA uncharacterized LOC100781107(LOC100781107) coding protein psRNATarget