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BaseInfo

ncRNA ID bra-miR9562-5p
Species Brassica rapa
Class miRNA
Genome position chrA2:18896191-18896339 [+]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 43 - ACUAUGCAAUUGUGAACAAAC - 63
Stem-loop(if miRNA) ---   --  CUUAAAACAUUUCCAAUUCCACUGUAAAAUGGAGUGGACUAUGCAAUUGUGAACAAACAAAAAAUU
   AGU  GU                                                                  C
   |||  ||
   GUU  AG                                                                  A
GAC   UU  AUGACGUUUUAUCUCACUUAAUACGUCAACACUUAUUUGUAUUUUUGUAAUGACGUAUAUAUCAUU
Stem-loop sequence AGUGUCUUAAAACAUUUCCAAUUCCACUGUAAAAUGGAGUGGACUAUGCAAUUGUGAACAAACAAAAAAUUCAUUACUAUAUAUGCAGUAAUGUUUUUAUGUUUAUUCACAACUGCAUAAUUCACUCUAUUUUGCAGUAGAUUUUGCAG

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).