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BaseInfo

ncRNA ID novel_gma_miR452
Species Glycine max
Class miRNA
Genome position Chr13:21567679-21567775 [+]
Reference genome Glycine_max_v2.0
Source SRR1451631
Length 20
Mature sequence(if miRNA) 1 - GAAGAUCAAGAAGACAGUGC - 20
Stem-loop(if miRNA) --G            ACA   CAU  AAA    -AAU   ---U   --   GUG
   AAGAUCAAGAAG   GUG   GA   UGGG    UCC    GCA  CAG   A
   ||||||||||||   |||   ||   ||||    |||    |||  |||
   UUCUGGUUUUUU   CAC   CU   GCCC    AGG    CGU  GUC   A
UAA            --G   --U  ---    AAUU   CUUU   UC   AUC
Stem-loop sequence GAAGAUCAAGAAGACAGUGCAUGAAAAUGGGAAUUCCUGCACAGGUGAACUACUGCUUGCUUUCGGAUUAACCCGUCUCACGUUUUUUGGUCUUAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003517466.3
ncRNA:20   CGUGACAGAAGAACUAGAAG   1
  *|||*||=||||||||||||
targets:543   CCACCGUUUUCUUGAUCUUC   562

2.5 PREDICTED: Glycine max uncharacterized LOC100820289 (LOC100820289), mRNA uncharacterized LOC100820289(LOC100820289) coding protein psRNATarget
BT097201.1
ncRNA:20   CGUGACAGAAGAACUAGAAG   1
  |||||*|||||||*||||||
targets:21   GCACUUUCUUCUUCAUCUUC   40

2.5 Soybean clone JCVI-FLGm-21P19 unknown mRNA NA coding protein psRNATarget
XM_003552579.3
ncRNA:20   CGUGACAGAAGAACUAGAAG   1
  *||*|||||||||*||||||
targets:136   ACAAUGUCUUCUUCAUCUUC   155

2.5 PREDICTED: Glycine max uncharacterized LOC100798297 (LOC100798297), mRNA uncharacterized LOC100798297(LOC100798297) coding protein psRNATarget
XM_006586018.2
ncRNA:20   CGUGACAGAAGAACUAGAAG   1
  *||||*|||||||*||||||
targets:121   UCACUUUCUUCUUCAUCUUC   140

2.5 PREDICTED: Glycine max peptide methionine sulfoxide reductase-like (LOC100796273), mRNA peptide methionine sulfoxide reductase-like(LOC100796273) coding protein psRNATarget
XM_003544874.3
ncRNA:20   CGUGACAGAAGAACUAGAAG   1
  *||||*|||||||*||||||
targets:63   ACACUUUCUUCUUCAUCUUC   82

2.5 PREDICTED: Glycine max peroxidase 4 (LOC100812415), mRNA peroxidase 4(LOC100812415) coding protein psRNATarget