Search result

BaseInfo

ncRNA ID	novel_gma_miR449
Species	Glycine max
Class	miRNA
Genome position	Chr1:34770834-34770962 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451631;SRR1451653;SRR1451655;SRR1451663;SRR1451664;SRR1451607
Length	21
Mature sequence(if miRNA)	1 - UUUCUAAGACGGUUGUUAGCU - 21
Stem-loop(if miRNA)	----              G            C          GU      --       C    CCCU     UUUCUAAGACGGUU UUAGCUAAGACC GUCUUAGAAA  GGACAU  UCUAAGA GGUU    U     |||||||||||||| |||||||||||| ||||||||||  ||||||  ||||||| ||||     AAAGAUUCUGCCAA AAUCGAUUCUGG CAGAAUCUUU  UCUGUG  AGAUUCU CCAA    C UAGG              G            -          --      AA       A    CAAU
Stem-loop sequence	UUUCUAAGACGGUUGUUAGCUAAGACCCGUCUUAGAAAGUGGACAUUCUAAGACGGUUCCCUUCUAACAACCAUCUUAGAAAGUGUCUUUUCUAAGACGGUCUUAGCUAAGAACCGUCUUAGAAAGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014763138.1	ncRNA:21   UCGAUUGUUGGCAGAAUCUUU   1   |*||||*||||*||||||||| targets:1589   AACUAAAAACCAUCUUAGAAA   1609 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X3, mRNA	uncharacterized LOC100806242(LOC100806242)	coding protein	psRNATarget
XM_006589010.2	ncRNA:21   UCGAUUGUUGGCAGAAUCUUU   1   |*||||*||||*||||||||| targets:2298   AACUAAAAACCAUCUUAGAAA   2318 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X2, mRNA	uncharacterized LOC100806242(LOC100806242)	coding protein	psRNATarget
XM_014775518.1	ncRNA:21   UCGAUUGUUGGCAGAAUCUUU   1   |*=*||=|||||||||||||| targets:737   AUUGAAUAACCGUCUUAGAAA   757 Target Full Sequence	3.0	PREDICTED: Glycine max methylsterol monooxygenase 1-1-like (LOC100802435), mRNA	methylsterol monooxygenase 1-1-like(LOC100802435)	coding protein	psRNATarget
XM_014764114.1	ncRNA:21   UCGAUUGUUGGCAGAAUCUUU   1   ****=|||||||||||||||| targets:2086   UAGAGACAACCGUCUUAGAAA   2106 Target Full Sequence	3.0	PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X6, mRNA	somatic embryogenesis receptor kinase 1-like(LOC100777573)	coding protein	psRNATarget
XM_014764113.1	ncRNA:21   UCGAUUGUUGGCAGAAUCUUU   1   ****=|||||||||||||||| targets:2094   UAGAGACAACCGUCUUAGAAA   2114 Target Full Sequence	3.0	PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X2, mRNA	somatic embryogenesis receptor kinase 1-like(LOC100777573)	coding protein	psRNATarget
XM_006591004.2	ncRNA:21   UCGAUUGUUGGCAGAAUCUUU   1   ****=|||||||||||||||| targets:2150   UAGAGACAACCGUCUUAGAAA   2170 Target Full Sequence	3.0	PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X5, mRNA	somatic embryogenesis receptor kinase 1-like(LOC100777573)	coding protein	psRNATarget
XM_014764112.1	ncRNA:21   UCGAUUGUUGGCAGAAUCUUU   1   ****=|||||||||||||||| targets:2166   UAGAGACAACCGUCUUAGAAA   2186 Target Full Sequence	3.0	PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X1, mRNA	somatic embryogenesis receptor kinase 1-like(LOC100777573)	coding protein	psRNATarget