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BaseInfo

ncRNA ID novel_gma_miR442
Species Glycine max
Class miRNA
Genome position Chr12:38919772-38919858 [-]
Reference genome Glycine_max_v2.0
Source SRR1451630;SRR1451632
Length 21
Mature sequence(if miRNA) 1 - CAACUGUUGAUUUUCUUAUCA - 21
Stem-loop(if miRNA) -AU   A                   A  U          AAU
   UAA AAAAUCAAUGGUUGAUAUU CA GCACAUUCAU   A
   ||| ||||||||||||||||||| || ||||||||||
   AUU UUUUAGUUGUCAACUAUAA GU UGUGUAAGUG   A
ACU   C                   G  U          CUA
Stem-loop sequence AUUAAAAAAAUCAAUGGUUGAUAUUACAUGCACAUUCAUAAUAAAUCGUGAAUGUGUUUGGAAUAUCAACUGUUGAUUUUCUUAUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GU967693.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar Williams rj2 protein (rj2) mRNA, complete cds NA coding protein psRNATarget
GU967692.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar Williams 82 rj2 protein (rj2) mRNA, complete cds NA coding protein psRNATarget
GU967694.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar Hill rj2 protein (rj2) mRNA, complete cds NA coding protein psRNATarget
HM771288.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar TN4-86 Rj2/Rfg1 protein mRNA, complete cds NA coding protein psRNATarget
NM_001252746.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max TMV resistance protein N-like (RJ2), mRNA TMV resistance protein N-like(RJ2) coding protein psRNATarget
GU967683.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar L82-2024 rj2 protein (rj2) mRNA, complete cds NA coding protein psRNATarget
HM771289.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar Emerald Rj2/Rfg1 protein mRNA, complete cds NA coding protein psRNATarget
GU967696.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar PI 548447 Rj2 protein (Rj2) mRNA, complete cds NA coding protein psRNATarget
GU967684.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar PI 209340 Rj2 protein (Rj2) mRNA, complete cds NA coding protein psRNATarget
HM771291.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar Sooty Rj2/Rfg1 protein mRNA, complete cds NA coding protein psRNATarget
HM771290.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar Davis Rj2/Rfg1 protein mRNA, complete cds NA coding protein psRNATarget
GU967685.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar PI 230974 Rj2 protein (Rj2) mRNA, complete cds NA coding protein psRNATarget
GU967691.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar Peking rj2 protein (rj2) mRNA, complete cds NA coding protein psRNATarget
HM771287.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar Kingwa Rj2/Rfg1 protein mRNA, complete cds NA coding protein psRNATarget
GU967689.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar Hardee Rj2 protein (Rj2) mRNA, complete cds NA coding protein psRNATarget
HM771292.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar McCall Rj2/Rfg1 protein mRNA, complete cds NA coding protein psRNATarget
GU967688.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar CNS Rj2 protein (Rj2) mRNA, complete cds NA coding protein psRNATarget
GU967687.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar PI 157469 Rj2 protein (Rj2) mRNA, complete cds NA coding protein psRNATarget
GU967695.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar Jack rj2 protein (rj2) mRNA, complete cds NA coding protein psRNATarget
GU967682.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar L76-1988 Rj2 protein (Rj2) mRNA, complete cds NA coding protein psRNATarget
GU967690.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar PI 548473 Rj2 protein (Rj2) mRNA, complete cds NA coding protein psRNATarget
GU967686.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:662   GGAUAGGAAAAUCAACACUUG   682

2.5 Glycine max cultivar PI 200522 Rj2 protein (Rj2) mRNA, complete cds NA coding protein psRNATarget
XM_014768436.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  *||||=|||||||||||*|||
targets:1006   GGAUAGGAAAAUCAACACUUG   1026

2.5 PREDICTED: Glycine max TMV resistance protein N-like (RJ2), transcript variant X1, mRNA TMV resistance protein N-like(RJ2) coding protein psRNATarget
XM_003534261.3
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  ||||*|||||||||||*||||
targets:1969   UGAUUAGAAAAUCAACUGUUG   1989

2.5 PREDICTED: Glycine max transmembrane protein 45A-like (LOC100809246), transcript variant X1, mRNA transmembrane protein 45A-like(LOC100809246) coding protein psRNATarget
XM_014762314.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  ||||*|||||||||||*||||
targets:2230   UGAUUAGAAAAUCAACUGUUG   2250

2.5 PREDICTED: Glycine max transmembrane protein 45A-like (LOC100809246), transcript variant X2, mRNA transmembrane protein 45A-like(LOC100809246) coding protein psRNATarget
XM_014774542.1
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  **||=|||||||||||*||||
targets:1235   CAAUGAGAAAAUCAACUGUUG   1255

2.5 PREDICTED: Glycine max probable transcriptional regulatory protein At2g25830 (LOC100818936), transcript variant X1, mRNA probable transcriptional regulatory protein At2g25830(LOC100818936) coding protein psRNATarget
XM_006583078.2
ncRNA:21   ACUAUUCUUUUAGUUGUCAAC   1
  ||||=|*|||||||||||||*
targets:13824   UGAUGAUAAAAUCAACAGUUA   13844

3.0 PREDICTED: Glycine max midasin-like (LOC102669841), mRNA midasin-like(LOC102669841) coding protein psRNATarget
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