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BaseInfo

ncRNA ID bra-miR395d-5p
Species Brassica rapa
Class miRNA
Genome position chrA2:11572546-11572653 [-]
Reference genome Brapa_1.1
Source miRBase
Length 21
Mature sequence(if miRNA) 71 - GUUCCUCUGAGCACUUCAUUG - 91
Stem-loop(if miRNA) GU      UU   UA         UG         U    UAUA      U  AU
  CGGAUG  UCC  GAGUUCCUC  AGCACUUCA UGGA    ACAUUU CU  C
  ||||||  |||  |||||||||  ||||||||| ||||    |||||| ||  A
  GCUUAC  AGG  CUCAAGGGG  UUGUGAAGU AUCU    UGUAAA GA  A
--      UC   UC         GU         C    --UA      -  AA
Stem-loop sequence GUCGGAUGUUUCCUAGAGUUCCUCUGAGCACUUCAUUGGAUAUAACAUUUUCUAUCAAAAAGAAAUGUAUUCUACUGAAGUGUUUGGGGGAACUCCUGGACUCAUUCG

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).