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BaseInfo

ncRNA ID novel_gma_miR428
Species Glycine max
Class miRNA
Genome position Chr7:41560798-41560932 [-]
Reference genome Glycine_max_v2.0
Source SRR1451630
Length 24
Mature sequence(if miRNA) 112 - AAAACCGAUGUUAACGAAGCGACG - 135
Stem-loop(if miRNA) --                                 A     UGCAUCGAUUUUUU      CG         UU
  AAAACCGAUGUUAACGAAGCGACGUUAACAUCG UUUUU              GAAAAC  AUGUUAAGG  G
  ||||||||||||||||||||||||||||||||| |||||              ||||||  |||||||||
  UUUUGGCUACAAUUGCUUCGCUGCAAUUGUAGC AAAAG              UUUUUG  UACAAUUCC  C
AG                                 C     -------------U      AU         UU
Stem-loop sequence AAAACCGAUGUUAACGAAGCGACGUUAACAUCGAUUUUUUGCAUCGAUUUUUUGAAAACCGAUGUUAAGGUUGCUUCCUUAACAUUAGUUUUUUGAAAACCGAUGUUAACGUCGCUUCGUUAACAUCGGUUUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006588741.2
ncRNA:24   GCAGCGAAGCAAUUGUAGCCAAAA   1
  |*|=|=||*|||||||||||||||
targets:2925   CAUUGUUUGGUUAACAUCGGUUUU   2948

2.0 PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102670366), transcript variant X2, mRNA phosphoinositide phosphatase SAC1-like(LOC102670366) coding protein psRNATarget
XM_014763017.1
ncRNA:24   GCAGCGAAGCAAUUGUAGCCAAAA   1
  |*|=|=||*|||||||||||||||
targets:3021   CAUUGUUUGGUUAACAUCGGUUUU   3044

2.0 PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102660101), transcript variant X1, mRNA phosphoinositide phosphatase SAC1-like(LOC102660101) coding protein psRNATarget