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BaseInfo

ncRNA ID novel_gma_miR419
Species Glycine max
Class miRNA
Genome position Chr6:22067230-22067310 [+]
Reference genome Glycine_max_v2.0
Source SRR1451630;SRR1451646
Length 21
Mature sequence(if miRNA) 61 - UAUAAAUAGGAAUGGAAGUAG - 81
Stem-loop(if miRNA) --  C    C                  A      G    
  AC UCCG UCCUAUUUAUAAGAAACA GUUAUA UGUAA
  || |||| |||||||||||||||||| |||||| ||||A
  UG AGGU AGGAUAAAUAUUCUUUGU CAAUAU ACAUA
GA  A    A                  A      A    
Stem-loop sequence ACCUCCGCUCCUAUUUAUAAGAAACAAGUUAUAGUGUAAAAUACAAUAUAACAUGUUUCUUAUAAAUAGGAAUGGAAGUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003550778.3
ncRNA:21   GAUGAAGGUAAGGAUAAAUAU   1
  **|||*=||||||||||||||
targets:109   AAACUCUCAUUCCUAUUUAUA   129

2.0 PREDICTED: Glycine max DEAD-box ATP-dependent RNA helicase 52B (LOC100791226), mRNA DEAD-box ATP-dependent RNA helicase 52B(LOC100791226) coding protein psRNATarget
BT094679.1
ncRNA:21   GAUGAAGGUAAGGAUAAAUAU   1
  *|=||||||||*|||||||||
targets:494   AUGCUUCCAUUGCUAUUUAUA   514

2.5 Soybean clone JCVI-FLGm-5P18 unknown mRNA NA coding protein psRNATarget