Search result

BaseInfo

ncRNA ID	novel_gma_miR405
Species	Glycine max
Class	miRNA
Genome position	Chr2:10978960-10979025 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451630;SRR1451634;SRR1451642;SRR1451646;SRR1451648;SRR1294484;SRR1451606;SRR1451612;SRR1451622;SRR1294477
Length	24
Mature sequence(if miRNA)	1 - AUUACGAGAUUGUUGUGUUUGACG - 24
Stem-loop(if miRNA)	--    U         GUA          UCCUU   UUAA GCACAACGA   UUGUGAUUAU     U   |||| |||||||||   ||||||||||   AGUU UGUGUUGUU   AGCAUUAAUA     A GC    -         -AG          UUAGU
Stem-loop sequence	UUAAUGCACAACGAGUAUUGUGAUUAUUCCUUUAUGAUUAUAAUUACGAGAUUGUUGUGUUUGACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014774655.1	ncRNA:24   GCAGUUUGUGUUGUUAGAGCAUUA   1   =||||||||=|||||||||||=|| targets:53   UGUCAAACAUAACAAUCUCGUGAU   76 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100798161 (LOC100798161), transcript variant X3, mRNA	uncharacterized LOC100798161(LOC100798161)	coding protein	psRNATarget
XM_003531089.3	ncRNA:24   GCAG---UUUGUGUUGUUAGAGCAUUA   1   |*||---|||*|||||||||||*|||| targets:181   CCUCCAAAAAAACAACAAUCUCUUAAU   207 Target Full Sequence	2.5	PREDICTED: Glycine max purple acid phosphatase 7 (LOC100789603), mRNA	purple acid phosphatase 7(LOC100789603)	coding protein	psRNATarget
AK245465.1	ncRNA:24   GCAG---UUUGUGUUGUUAGAGCAUUA   1   |*||---|||*|||||||||||*|||| targets:166   CCUCCAAAAAAACAACAAUCUCUUAAU   192 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-31-D05	NA	coding protein	psRNATarget
NM_001254279.1	ncRNA:24   GCAG---UUUGUGUUGUUAGAGCAUUA   1   |*||---|||*|||||||||||*|||| targets:195   CCUCCAAAAAAACAACAAUCUCUUAAU   221 Target Full Sequence	2.5	Glycine max purple acid phosphatase 8-like (LOC100818610), mRNA	purple acid phosphatase 8-like(LOC100818610)	coding protein	psRNATarget