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BaseInfo

ncRNA ID	bra-miR156a-3p
Species	Brassica rapa
Class	miRNA
Genome position	chrA2:2983764-2983891 [+]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	94 - GCUUACUCUCUCUCUGUCACC - 114
Stem-loop(if miRNA)	--AA  UA     A         -                    GGCU   UU     ---    UUU     GG  AGGGG GGUGACAGA AGAGAGUGAGCACACAUGGU    UUC  GCAUG   CUUU   C     ||  ||||| ||||||||| ||||||||||||||||||||    |||  |||||   ||||     UC  UCUUC CCACUGUCU UCUCUCAUUCGUGUGUAUCG    AAG  CGUAC   GGGA   A UCUC  UC     C         C                    ----   UU     UUU    UUA
Stem-loop sequence	AAGGUAAGGGGAGGUGACAGAAGAGAGUGAGCACACAUGGUGGCUUUCUUGCAUGCUUUUUUCAAUUAGGGUUUCAUGCUUGAAGCUAUGUGUGCUUACUCUCUCUCUGUCACCCCUUCUCUCUCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HM579884.1	ncRNA:21   CCACUGUCUCUCUCUCAUUCG   1   ||||||||||||||||*|||| targets:358   GGUGACAGAGAGAGAGGAAGC   378 Target Full Sequence	1.5	Brassica rapa C3HC4 type zinc finger protein (RZFP9) mRNA, complete cds	NA	coding protein	psRNATarget
XM_009108624.2	ncRNA:21   CCACUGUCUCUCUCUCAUUCG   1   ||||||||||||||||*|||| targets:502   GGUGACAGAGAGAGAGGAAGC   522 Target Full Sequence	1.5	PREDICTED: Brassica rapa E3 ubiquitin-protein ligase RING1-like (LOC103832581), transcript variant X2, mRNA	E3 ubiquitin-protein ligase RING1-like(LOC103832581)	coding protein	psRNATarget
XM_009108623.2	ncRNA:21   CCACUGUCUCUCUCUCAUUCG   1   ||||||||||||||||*|||| targets:560   GGUGACAGAGAGAGAGGAAGC   580 Target Full Sequence	1.5	PREDICTED: Brassica rapa E3 ubiquitin-protein ligase RING1-like (LOC103832581), transcript variant X1, mRNA	E3 ubiquitin-protein ligase RING1-like(LOC103832581)	coding protein	psRNATarget
XM_009128769.2	ncRNA:21   CCACUGUCUCUCUCUCAUUCG   1   *||||*|||||||||||*||| targets:53   AGUGAGAGAGAGAGAGUCAGC   73 Target Full Sequence	2.5	PREDICTED: Brassica rapa trigger factor-like protein TIG, Chloroplastic (LOC103851893), mRNA	trigger factor-like protein TIG, Chloroplastic(LOC103851893)	coding protein	psRNATarget
XM_009106099.2	ncRNA:21   CCA-CUGUCUCUCUCUCAUUCG   1   *||-|*|||||||||||||||| targets:74   UGUCGCCAGAGAGAGAGUAAGC   95 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC103830326 (LOC103830326), mRNA	uncharacterized LOC103830326(LOC103830326)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).