Search result

BaseInfo

ncRNA ID	novel_gma_miR396
Species	Glycine max
Class	miRNA
Genome position	Chr10:610785-611006 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1294478
Length	21
Mature sequence(if miRNA)	1 - UUGACCAAAUCUUGAGAGACU - 21
Stem-loop(if miRNA)	--             C      C   A      AAA        UAU     A           CUCAA     CAA    GA      UUUCAUC     CCCUA   U  A   UCUCUCAAGAUUU GUCAAA UUG UUUUAG   AUAUAUUU   AAAUG UGGUUUUGGUU     AUUUU   AAAU  GGUGGA       UCUUA     UAU UC U   ||||||||||||| |||||| ||| ||||||   ||||||||   ||||| |||||||||||     |||||   ||||  ||||||       |||||     ||| || U   AGAGAGUUCUAAA CAGUUU AAC AAAAUC   UAUGUAAA   UUUAC AUCAAAACCAG     UAAAA   UUUG  CCACCU       AGGAU     AUA AG U UC             C      A   C      GGG        UUU     C           CAACA     -AA    -A      UAAAACA     ---CA   C  U
Stem-loop sequence	UCUCUCAAGAUUUCGUCAAACUUGAUUUUAGAAAAUAUAUUUUAUAAAUGAUGGUUUUGGUUCUCAAAUUUUCAAAAAUGAGGUGGAUUUCAUCUCUUACCCUAUAUUUCAUUUUGACAUAACUAGGAACAAAAUUCCACCAGUUUAAAAAAUACAACGACCAAAACUACCAUUUUUUAAAUGUAUGGGCUAAAACCAAAUUUGACCAAAUCUUGAGAGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006582612.1	ncRNA:21   UCAGAGAGUUCUAAACCAGUU   1   =||=||**||||||||||||| targets:1085   GGUUUCCAAAGAUUUGGUCAA   1105 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC102664702 (LOC102664702), mRNA	uncharacterized LOC102664702(LOC102664702)	coding protein	psRNATarget
XM_006592249.2	ncRNA:21   UCAGAGAGUUCUAAACCAGUU   1   |*|||*|=||||||||||||* targets:5343   ACUCUAUUAAGAUUUGGUCAU   5363 Target Full Sequence	3.0	PREDICTED: Glycine max DNA polymerase epsilon catalytic subunit A-like (LOC100812003), transcript variant X2, mRNA	DNA polymerase epsilon catalytic subunit A-like(LOC100812003)	coding protein	psRNATarget
XM_006592248.2	ncRNA:21   UCAGAGAGUUCUAAACCAGUU   1   |*|||*|=||||||||||||* targets:5346   ACUCUAUUAAGAUUUGGUCAU   5366 Target Full Sequence	3.0	PREDICTED: Glycine max DNA polymerase epsilon catalytic subunit A-like (LOC100812003), transcript variant X1, mRNA	DNA polymerase epsilon catalytic subunit A-like(LOC100812003)	coding protein	psRNATarget